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23 Open 105 Closed
23 Open 105 Closed
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Issues list

Compute stats for variants feature
#129 opened Sep 20, 2017 by jtarraga
@jtarraga
Support for PLINK, a third-party analysis tool for variants feature
#128 opened Sep 8, 2017 by jtarraga
@jtarraga
Include sample filters using pedigree info when querying variants enhancement
#127 opened Aug 24, 2017 by jtarraga
@jtarraga
Implement variant association analysis (chi-square, linear/logistic regression) using Spark MLlib enhancement task
#126 opened Jun 1, 2017 by jtarraga
6 tasks
@jtarraga
Support for rvtests, a third-party analysis tool for rare variants. feature task
#125 opened Jan 19, 2017 by jtarraga
@jtarraga
Create web service to execute variant queries feature
#112 opened Sep 22, 2016 by jtarraga
@jtarraga
Compress the output file (variant query command line) feature
#111 opened Sep 21, 2016 by jtarraga
@jtarraga
Use the standard output and JSON format (variant query command line) enhancement
#108 opened Sep 21, 2016 by jtarraga
@jtarraga
Output aligment stats in plain text format feature
#104 opened Sep 21, 2016 by jtarraga
@jtarraga
Improve JSON for alignment stats enhancement
#103 opened Sep 21, 2016 by jtarraga
@jtarraga
Create the 'variant metadata' command line feature task
#92 opened Sep 14, 2016 by jtarraga
@jtarraga
Add the parameters --exclude-sequences and --exclude-qualities to the alignment view command line enhancement
#91 opened Sep 14, 2016 by jtarraga
@jtarraga
Add the --vcf parameter to the variant view command line enhancement
#89 opened Sep 14, 2016 by jtarraga
@jtarraga
Add the --sort parameter to the alignment convert command line enhancement
#80 opened Sep 12, 2016 by jtarraga
@jtarraga
Implement the filter by flags for AlignmentDataset feature task
#68 opened Aug 18, 2016 by jtarraga v1.0.0-alpha
@jtarraga
Implement the VariantParseQuery error management enhancement
#53 opened Aug 10, 2016 by jtarraga v1.0.0-alpha
@jtarraga
Update README with build instructions
#34 opened Oct 8, 2015 by laserson
HBase-based 'tabix' mode for VCF task
#30 opened Sep 18, 2015 by imedina v0.6.0
@imedina
Enable "variants-only" mode for VariantContext2VariantConverter enhancement
#24 opened Aug 18, 2015 by laserson v0.6.0
@mh11
1
Make use of Maven Shade for some dependency conflicts enhancement
#22 opened Jul 3, 2015 by imedina v0.6.0
@imedina
1
Full expansion of gVCF enhancement hbase task
#19 opened Jun 30, 2015 by mh11 Under consideration
@mh11
1
Load variant data into HBase using MR enhancement task
#11 opened May 21, 2015 by mh11 v0.6.0
@mh11
NGS Aligner port from HPG Aligner task
#8 opened May 18, 2015 by imedina v0.6.0
@jtarraga
ProTip! Exclude everything labeled bug with -label:bug.