Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Issues with cellbase URL for gnomad? #647

Open
bbitarello opened this issue Mar 2, 2023 · 0 comments
Open

Issues with cellbase URL for gnomad? #647

bbitarello opened this issue Mar 2, 2023 · 0 comments

Comments

@bbitarello
Copy link

bbitarello commented Mar 2, 2023

Hello,
I am sorry if this is a very basic question.

We have a query tool that uses the cellbase restful API for Gnomad. It used to work perfectly but now there seem to be issues with the URL. Does this have something to do with the major updates gnomad went through? Does anyone know how to solve this?

Our tool uses this REST API end point URL:

http://bioinfo.hpc.cam.ac.uk/cellbase/webservices/rest/v4/hsapiens/feature/variation/

Code snippet:

let urlStart = 'http://bioinfo.hpc.cam.ac.uk/cellbase/webservices/rest/v4/hsapiens/feature/variation/';
let urlEnd = '/info?limit%3D-1%26skip%3D-1%26skipCount%3Dfalse%26count%3Dfalse%26Output%2520format%3Djson';

Our script is here:
https://github.com/crankysparrow/computationalbio/blob/master/scripts/geturl.js

Any help is appreciated. Thank you!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant