From 878ed864fb3171ef0f229c71914631ca779d2f3e Mon Sep 17 00:00:00 2001 From: Ulrike Schlegel Date: Sat, 18 Jan 2025 15:42:01 +0100 Subject: [PATCH] UBERON_ungrouped-A07 --- .../MeissnersCorpuscle.jsonld | 15 +++++++++++++ .../MeyersLoopOfOpticRadiation.jsonld | 18 +++++++++++++++ .../medullaryReticularFormation.jsonld | 7 +++--- .../meningealCluster.jsonld | 19 ++++++++++++++++ .../UBERONParcellation/meninx.jsonld | 18 +++++++++++++++ .../meninxOfHindbrain.jsonld | 11 +++++++--- .../meninxOfMidbrain.jsonld | 17 ++++++++++++++ .../mesentericPlexus.jsonld | 15 +++++++++++++ .../UBERONParcellation/mesomere1.jsonld | 17 ++++++++++++++ .../UBERONParcellation/mesomere2.jsonld | 18 +++++++++++++++ .../UBERONParcellation/mesopallium.jsonld | 15 +++++++++++++ .../UBERONParcellation/metathalamus.jsonld | 9 +++----- .../UBERONParcellation/midbrain.jsonld | 10 ++++----- .../midbrainBasalPlate.jsonld | 18 +++++++++++++++ .../midbrainCerebralAqueduct.jsonld | 12 +++++----- .../midbrainNeuromere.jsonld | 18 +++++++++++++++ .../midbrainReticularFormation.jsonld | 10 +++------ .../midbrainSubarachnoidSpace.jsonld | 17 ++++++++++++++ .../UBERONParcellation/midbrainTectum.jsonld | 15 +++++-------- .../midbrainTegmentum.jsonld | 9 +++----- .../midbrainhindbrainBoundary.jsonld | 14 ++++++++---- .../UBERONParcellation/midlineColumn.jsonld | 15 +++++++++++++ .../midlineNuclearGroup.jsonld | 9 +++----- .../UBERONParcellation/mossyFiber.jsonld | 15 +++++++++++++ .../UBERONParcellation/muscleSpindle.jsonld | 17 ++++++++++++++ .../UBERONParcellation/myelin.jsonld | 15 +++++++++++++ .../neuralDecussation.jsonld | 20 +++++++++++++++++ .../neuralGlomerulus.jsonld | 15 +++++++++++++ .../UBERONParcellation/neuralTissue.jsonld | 19 ++++++++++++++++ .../neuralTubeAlarPlate.jsonld | 18 +++++++++++++++ .../neuralTubeBasalPlate.jsonld | 18 +++++++++++++++ .../neuralTubeDerivedBrain.jsonld | 15 +++++++++++++ .../neuroendocrineGland.jsonld | 17 ++++++++++++++ .../UBERONParcellation/neurohypophysis.jsonld | 21 +++++++++++++++--- .../UBERONParcellation/neuromere.jsonld | 19 ++++++++++++++++ .../neuronProjectionBundle.jsonld | 19 ++++++++++++++++ ...jectionBundleConnectingEyeWithBrain.jsonld | 17 ++++++++++++++ .../UBERONParcellation/neuropil.jsonld | 15 +++++++++++++ .../UBERONParcellation/nidopallium.jsonld | 15 +++++++++++++ .../UBERONParcellation/nodosalPlacode.jsonld | 19 ++++++++++++++++ .../nuclearComplexOfNeuraxis.jsonld | 15 +++++++++++++ .../UBERONParcellation/occipitalPole.jsonld | 17 ++++++++++++++ .../occipitofrontalFasciculus.jsonld | 15 +++++++++++++ ...rDivisionOfOculomotorNuclearComplex.jsonld | 15 +++++++++++++ .../oculomotorNuclearComplex.jsonld | 11 ++++------ .../UBERONParcellation/olivaryBody.jsonld | 17 ++++++++++++++ .../olivocochlearBundle.jsonld | 22 +++++++++++++++++++ .../UBERONParcellation/ommatidium.jsonld | 17 ++++++++++++++ .../operculumOfBrain.jsonld | 15 +++++++++++++ .../ophthalmicPlexus.jsonld | 20 +++++++++++++++++ .../MeissnersCorpuscle.jsonld | 15 +++++++++++++ .../MeyersLoopOfOpticRadiation.jsonld | 18 +++++++++++++++ .../medullaryReticularFormation.jsonld | 7 +++--- .../meningealCluster.jsonld | 19 ++++++++++++++++ .../UBERONParcellation/meninx.jsonld | 18 +++++++++++++++ .../meninxOfHindbrain.jsonld | 11 +++++++--- .../meninxOfMidbrain.jsonld | 17 ++++++++++++++ .../mesentericPlexus.jsonld | 15 +++++++++++++ .../UBERONParcellation/mesomere1.jsonld | 17 ++++++++++++++ .../UBERONParcellation/mesomere2.jsonld | 18 +++++++++++++++ .../UBERONParcellation/mesopallium.jsonld | 15 +++++++++++++ .../UBERONParcellation/metathalamus.jsonld | 9 +++----- .../UBERONParcellation/midbrain.jsonld | 10 ++++----- .../midbrainBasalPlate.jsonld | 18 +++++++++++++++ .../midbrainCerebralAqueduct.jsonld | 12 +++++----- .../midbrainNeuromere.jsonld | 18 +++++++++++++++ .../midbrainReticularFormation.jsonld | 10 +++------ .../midbrainSubarachnoidSpace.jsonld | 17 ++++++++++++++ .../UBERONParcellation/midbrainTectum.jsonld | 15 +++++-------- .../midbrainTegmentum.jsonld | 9 +++----- .../midbrainhindbrainBoundary.jsonld | 14 ++++++++---- .../UBERONParcellation/midlineColumn.jsonld | 15 +++++++++++++ .../midlineNuclearGroup.jsonld | 9 +++----- .../UBERONParcellation/mossyFiber.jsonld | 15 +++++++++++++ .../UBERONParcellation/muscleSpindle.jsonld | 17 ++++++++++++++ .../UBERONParcellation/myelin.jsonld | 15 +++++++++++++ .../neuralDecussation.jsonld | 20 +++++++++++++++++ .../neuralGlomerulus.jsonld | 15 +++++++++++++ .../UBERONParcellation/neuralTissue.jsonld | 19 ++++++++++++++++ .../neuralTubeAlarPlate.jsonld | 18 +++++++++++++++ .../neuralTubeBasalPlate.jsonld | 18 +++++++++++++++ .../neuralTubeDerivedBrain.jsonld | 15 +++++++++++++ .../neuroendocrineGland.jsonld | 17 ++++++++++++++ .../UBERONParcellation/neurohypophysis.jsonld | 21 +++++++++++++++--- .../UBERONParcellation/neuromere.jsonld | 19 ++++++++++++++++ .../neuronProjectionBundle.jsonld | 19 ++++++++++++++++ ...jectionBundleConnectingEyeWithBrain.jsonld | 17 ++++++++++++++ .../UBERONParcellation/neuropil.jsonld | 15 +++++++++++++ .../UBERONParcellation/nidopallium.jsonld | 15 +++++++++++++ .../UBERONParcellation/nodosalPlacode.jsonld | 19 ++++++++++++++++ .../nuclearComplexOfNeuraxis.jsonld | 15 +++++++++++++ .../UBERONParcellation/occipitalPole.jsonld | 17 ++++++++++++++ .../occipitofrontalFasciculus.jsonld | 15 +++++++++++++ ...rDivisionOfOculomotorNuclearComplex.jsonld | 15 +++++++++++++ .../oculomotorNuclearComplex.jsonld | 11 ++++------ .../UBERONParcellation/olivaryBody.jsonld | 17 ++++++++++++++ .../olivocochlearBundle.jsonld | 22 +++++++++++++++++++ .../UBERONParcellation/ommatidium.jsonld | 17 ++++++++++++++ .../operculumOfBrain.jsonld | 15 +++++++++++++ .../ophthalmicPlexus.jsonld | 20 +++++++++++++++++ .../MeissnersCorpuscle.jsonld | 15 +++++++++++++ .../MeyersLoopOfOpticRadiation.jsonld | 18 +++++++++++++++ .../medullaryReticularFormation.jsonld | 7 +++--- .../meningealCluster.jsonld | 19 ++++++++++++++++ .../UBERONParcellation/meninx.jsonld | 18 +++++++++++++++ .../meninxOfHindbrain.jsonld | 11 +++++++--- .../meninxOfMidbrain.jsonld | 17 ++++++++++++++ .../mesentericPlexus.jsonld | 15 +++++++++++++ .../UBERONParcellation/mesomere1.jsonld | 17 ++++++++++++++ .../UBERONParcellation/mesomere2.jsonld | 18 +++++++++++++++ .../UBERONParcellation/mesopallium.jsonld | 15 +++++++++++++ .../UBERONParcellation/metathalamus.jsonld | 9 +++----- .../UBERONParcellation/midbrain.jsonld | 10 ++++----- .../midbrainBasalPlate.jsonld | 18 +++++++++++++++ .../midbrainCerebralAqueduct.jsonld | 12 +++++----- .../midbrainNeuromere.jsonld | 18 +++++++++++++++ .../midbrainReticularFormation.jsonld | 10 +++------ .../midbrainSubarachnoidSpace.jsonld | 17 ++++++++++++++ .../UBERONParcellation/midbrainTectum.jsonld | 15 +++++-------- .../midbrainTegmentum.jsonld | 9 +++----- .../midbrainhindbrainBoundary.jsonld | 14 ++++++++---- .../UBERONParcellation/midlineColumn.jsonld | 15 +++++++++++++ .../midlineNuclearGroup.jsonld | 9 +++----- .../UBERONParcellation/mossyFiber.jsonld | 15 +++++++++++++ .../UBERONParcellation/muscleSpindle.jsonld | 17 ++++++++++++++ .../UBERONParcellation/myelin.jsonld | 15 +++++++++++++ .../neuralDecussation.jsonld | 20 +++++++++++++++++ .../neuralGlomerulus.jsonld | 15 +++++++++++++ .../UBERONParcellation/neuralTissue.jsonld | 19 ++++++++++++++++ .../neuralTubeAlarPlate.jsonld | 18 +++++++++++++++ .../neuralTubeBasalPlate.jsonld | 18 +++++++++++++++ .../neuralTubeDerivedBrain.jsonld | 15 +++++++++++++ .../neuroendocrineGland.jsonld | 17 ++++++++++++++ .../UBERONParcellation/neurohypophysis.jsonld | 21 +++++++++++++++--- .../UBERONParcellation/neuromere.jsonld | 19 ++++++++++++++++ .../neuronProjectionBundle.jsonld | 19 ++++++++++++++++ ...jectionBundleConnectingEyeWithBrain.jsonld | 17 ++++++++++++++ .../UBERONParcellation/neuropil.jsonld | 15 +++++++++++++ .../UBERONParcellation/nidopallium.jsonld | 15 +++++++++++++ .../UBERONParcellation/nodosalPlacode.jsonld | 19 ++++++++++++++++ .../nuclearComplexOfNeuraxis.jsonld | 15 +++++++++++++ .../UBERONParcellation/occipitalPole.jsonld | 17 ++++++++++++++ .../occipitofrontalFasciculus.jsonld | 15 +++++++++++++ ...rDivisionOfOculomotorNuclearComplex.jsonld | 15 +++++++++++++ .../oculomotorNuclearComplex.jsonld | 11 ++++------ .../UBERONParcellation/olivaryBody.jsonld | 17 ++++++++++++++ .../olivocochlearBundle.jsonld | 22 +++++++++++++++++++ .../UBERONParcellation/ommatidium.jsonld | 17 ++++++++++++++ .../operculumOfBrain.jsonld | 15 +++++++++++++ .../ophthalmicPlexus.jsonld | 20 +++++++++++++++++ 150 files changed, 2148 insertions(+), 204 deletions(-) create mode 100644 instances/latest/terminologies/UBERONParcellation/MeissnersCorpuscle.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/MeyersLoopOfOpticRadiation.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/meningealCluster.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/meninx.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/meninxOfMidbrain.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/mesentericPlexus.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/mesomere1.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/mesomere2.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/mesopallium.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/midbrainBasalPlate.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/midbrainNeuromere.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/midbrainSubarachnoidSpace.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/midlineColumn.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/mossyFiber.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/muscleSpindle.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/myelin.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/neuralDecussation.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/neuralGlomerulus.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/neuralTissue.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/neuralTubeAlarPlate.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/neuralTubeBasalPlate.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/neuralTubeDerivedBrain.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/neuroendocrineGland.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/neuromere.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/neuronProjectionBundle.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/neuronProjectionBundleConnectingEyeWithBrain.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/neuropil.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/nidopallium.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/nodosalPlacode.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/nuclearComplexOfNeuraxis.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/occipitalPole.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/occipitofrontalFasciculus.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/oculomotorDivisionOfOculomotorNuclearComplex.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/olivaryBody.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/olivocochlearBundle.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/ommatidium.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/operculumOfBrain.jsonld create mode 100644 instances/latest/terminologies/UBERONParcellation/ophthalmicPlexus.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/MeissnersCorpuscle.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/MeyersLoopOfOpticRadiation.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/meningealCluster.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/meninx.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/meninxOfMidbrain.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/mesentericPlexus.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/mesomere1.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/mesomere2.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/mesopallium.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/midbrainBasalPlate.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/midbrainNeuromere.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/midbrainSubarachnoidSpace.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/midlineColumn.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/mossyFiber.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/muscleSpindle.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/myelin.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/neuralDecussation.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/neuralGlomerulus.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/neuralTissue.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/neuralTubeAlarPlate.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/neuralTubeBasalPlate.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/neuralTubeDerivedBrain.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/neuroendocrineGland.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/neuromere.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/neuronProjectionBundle.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/neuronProjectionBundleConnectingEyeWithBrain.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/neuropil.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/nidopallium.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/nodosalPlacode.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/nuclearComplexOfNeuraxis.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/occipitalPole.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/occipitofrontalFasciculus.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/oculomotorDivisionOfOculomotorNuclearComplex.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/olivaryBody.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/olivocochlearBundle.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/ommatidium.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/operculumOfBrain.jsonld create mode 100644 instances/v3.0/terminologies/UBERONParcellation/ophthalmicPlexus.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/MeissnersCorpuscle.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/MeyersLoopOfOpticRadiation.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/meningealCluster.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/meninx.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/meninxOfMidbrain.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/mesentericPlexus.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/mesomere1.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/mesomere2.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/mesopallium.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/midbrainBasalPlate.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/midbrainNeuromere.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/midbrainSubarachnoidSpace.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/midlineColumn.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/mossyFiber.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/muscleSpindle.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/myelin.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/neuralDecussation.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/neuralGlomerulus.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/neuralTissue.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/neuralTubeAlarPlate.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/neuralTubeBasalPlate.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/neuralTubeDerivedBrain.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/neuroendocrineGland.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/neuromere.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/neuronProjectionBundle.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/neuronProjectionBundleConnectingEyeWithBrain.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/neuropil.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/nidopallium.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/nodosalPlacode.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/nuclearComplexOfNeuraxis.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/occipitalPole.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/occipitofrontalFasciculus.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/oculomotorDivisionOfOculomotorNuclearComplex.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/olivaryBody.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/olivocochlearBundle.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/ommatidium.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/operculumOfBrain.jsonld create mode 100644 instances/v4.0/terminologies/UBERONParcellation/ophthalmicPlexus.jsonld diff --git a/instances/latest/terminologies/UBERONParcellation/MeissnersCorpuscle.jsonld b/instances/latest/terminologies/UBERONParcellation/MeissnersCorpuscle.jsonld new file mode 100644 index 000000000..36e9af4ad --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/MeissnersCorpuscle.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/MeissnersCorpuscle", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a mechanoreceptor. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0012450)]", + "description": "A type of nerve ending in the skin that is responsible for sensitivity to light touch. In particular, they have highest sensitivity (lowest threshold) when sensing vibrations lower than 50 Hertz. They are rapidly adaptive receptors. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0012450)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0012450#meissner-s-corpuscle", + "name": "Meissner's corpuscle", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0012450", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/MeyersLoopOfOpticRadiation.jsonld b/instances/latest/terminologies/UBERONParcellation/MeyersLoopOfOpticRadiation.jsonld new file mode 100644 index 000000000..2bdf0c0bc --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/MeyersLoopOfOpticRadiation.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/MeyersLoopOfOpticRadiation", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a radiation of cerebral hemisphere. Is part of the optic radiation. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035935) ('is_a' and 'relationship')]", + "description": "Part of the optic radiation which sweeps back on itself into the temporal lobe, just lateral to the temporal horn of the lateral ventricle.. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035935)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035935#meyer-s-loop-of-optic-radiation", + "name": "Meyer's loop of optic radiation", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035935", + "synonym": [ + "inferior optic radiation", + "Meyer's loop" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/medullaryReticularFormation.jsonld b/instances/latest/terminologies/UBERONParcellation/medullaryReticularFormation.jsonld index c49f668f9..457e024b6 100644 --- a/instances/latest/terminologies/UBERONParcellation/medullaryReticularFormation.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/medullaryReticularFormation.jsonld @@ -4,8 +4,8 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/medullaryReticularFormation", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Medullary reticular formation' is a nuclear complex of neuraxis and gray matter of hindbrain. It is part of the medulla oblongata and reticular formation.", - "description": "Part of reticular formation located in the medulla", + "definition": "Is a nuclear complex of neuraxis and gray matter of hindbrain. Is part of the medulla oblongata and the reticular formation. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002559) ('is_a' and 'relationship')]", + "description": "The reticular formation is a series of brain nuclei located in the medulla oblongata. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002559)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106744", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002559#medullary-reticular-formation-1", "name": "medullary reticular formation", @@ -13,12 +13,10 @@ "synonym": [ "bulb reticular formation", "bulbar reticular formation", - "formatio reticularis myelencephali", "medulla oblongata reticular formation", "medulla oblonmgata reticular formation", "medullary reticular nucleus", "metepencephalon reticular formation", - "reticular formation", "reticular formation of bulb", "reticular formation of medulla", "reticular formation of medulla oblongata", @@ -27,3 +25,4 @@ "rhombencephalic reticular formation" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/meningealCluster.jsonld b/instances/latest/terminologies/UBERONParcellation/meningealCluster.jsonld new file mode 100644 index 000000000..03ea736d5 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/meningealCluster.jsonld @@ -0,0 +1,19 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/meningealCluster", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an anatomical entity. Is part of the central nervous system. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0010743) ('is_a' and 'relationship')]", + "description": "The collection of all meningeal layers that line a central nervous system. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0010743)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0010743#meningeal-cluster", + "name": "meningeal cluster", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0010743", + "synonym": [ + "cerebral meninges", + "cluster of meninges", + "meninges" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/meninx.jsonld b/instances/latest/terminologies/UBERONParcellation/meninx.jsonld new file mode 100644 index 000000000..ea06853c4 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/meninx.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/meninx", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is part of the meningeal cluster. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002360)]", + "description": "Membrane organ that surrounds the brain and the spinal cord. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002360)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002360#meninx-1", + "name": "meninx", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002360", + "synonym": [ + "layer of meninges", + "meningeal layer" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/meninxOfHindbrain.jsonld b/instances/latest/terminologies/UBERONParcellation/meninxOfHindbrain.jsonld index f4e936eda..20c990524 100644 --- a/instances/latest/terminologies/UBERONParcellation/meninxOfHindbrain.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/meninxOfHindbrain.jsonld @@ -4,11 +4,16 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/meninxOfHindbrain", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Meninx of hindbrain' is a brain meninx. It is part of the hindbrain.", - "description": null, + "definition": "Is a brain meninx. Is part of the hindbrain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003291) ('is_a' and 'relationship')]", + "description": "A meninx that is part of a hindbrain. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003291)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0736366", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003291#meninx-of-hindbrain", "name": "meninx of hindbrain", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003291", - "synonym": null + "synonym": [ + "hindbrain meninges", + "hindbrain meninx", + "meninges of hindbrain" + ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/meninxOfMidbrain.jsonld b/instances/latest/terminologies/UBERONParcellation/meninxOfMidbrain.jsonld new file mode 100644 index 000000000..0b9c1b9b2 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/meninxOfMidbrain.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/meninxOfMidbrain", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a brain meninx. Is part of the midbrain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003288) ('is_a' and 'relationship')]", + "description": "A meninx that is part of a midbrain. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003288)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003288#meninx-of-midbrain", + "name": "meninx of midbrain", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003288", + "synonym": [ + "midbrain meninx" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/mesentericPlexus.jsonld b/instances/latest/terminologies/UBERONParcellation/mesentericPlexus.jsonld new file mode 100644 index 000000000..18c1306e3 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/mesentericPlexus.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/mesentericPlexus", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an autonomic nerve plexus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035771)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035771#mesenteric-plexus", + "name": "mesenteric plexus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035771", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/mesomere1.jsonld b/instances/latest/terminologies/UBERONParcellation/mesomere1.jsonld new file mode 100644 index 000000000..d222b7028 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/mesomere1.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/mesomere1", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a midbrain neuromere. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0019272)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0019272#mesomere-1", + "name": "mesomere 1", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0019272", + "synonym": [ + "mesomere M1" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/mesomere2.jsonld b/instances/latest/terminologies/UBERONParcellation/mesomere2.jsonld new file mode 100644 index 000000000..b189fb7bd --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/mesomere2.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/mesomere2", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a midbrain neuromere. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0019274)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0019274#mesomere-2", + "name": "mesomere 2", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0019274", + "synonym": [ + "mesomere 2 (preisthmus or caudal midbrain)", + "mesomere M2" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/mesopallium.jsonld b/instances/latest/terminologies/UBERONParcellation/mesopallium.jsonld new file mode 100644 index 000000000..d6770bbd4 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/mesopallium.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/mesopallium", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a regional part of brain. Is part of the pallium. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007349) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007349#mesopallium", + "name": "mesopallium", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007349", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/metathalamus.jsonld b/instances/latest/terminologies/UBERONParcellation/metathalamus.jsonld index 2966782d7..d6d1ef3d6 100644 --- a/instances/latest/terminologies/UBERONParcellation/metathalamus.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/metathalamus.jsonld @@ -4,19 +4,16 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/metathalamus", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Metathalamus' is a nucleus of dorsal thalamus.", - "description": "The metathalamus is a composite structure of the thalamus, consisting of the medial geniculate nucleus and the lateral geniculate nucleus. [WP,unvetted].", + "definition": "Is a nucleus of dorsal thalamus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002704)]", + "description": "The metathalamus is a composite structure of the thalamus, consisting of the medial geniculate nucleus and the lateral geniculate nucleus. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002704)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106839", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002704#metathalamus-1", "name": "metathalamus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002704", "synonym": [ - "corpora geniculata", - "geniculate group of dorsal thalamus", "geniculate group of the dorsal thalamus", "geniculate thalamic group", - "geniculate thalamic nuclear group (metathalamus)", - "MTh", "nuclei metathalami" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/midbrain.jsonld b/instances/latest/terminologies/UBERONParcellation/midbrain.jsonld index b287c0071..53ff0b00c 100644 --- a/instances/latest/terminologies/UBERONParcellation/midbrain.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/midbrain.jsonld @@ -4,14 +4,12 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/midbrain", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Midbrain' is a regional part of brain.", - "description": "Part of the brain that develops from the middle of the 3 primary vesicles of the embryonic neural tube, between the prosencephalon and rhombencephalon, later forming the tectum and cerebral peduncles. (CSP)", + "definition": "Is a regional part of brain. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001891)]", + "description": "The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001891)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106935", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001891#midbrain-1", "name": "midbrain", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001891", - "synonym": [ - "MB", - "Mesencephalon" - ] + "synonym": null } + diff --git a/instances/latest/terminologies/UBERONParcellation/midbrainBasalPlate.jsonld b/instances/latest/terminologies/UBERONParcellation/midbrainBasalPlate.jsonld new file mode 100644 index 000000000..ea61f7fda --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/midbrainBasalPlate.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/midbrainBasalPlate", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a gray matter. Is part of the midbrain mantle layer. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0010285) ('is_a' and 'relationship')]", + "description": "Portion of tissue that is dorsolateral to the floor plate and part of the midbrain. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0010285)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0010285#midbrain-basal-plate", + "name": "midbrain basal plate", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0010285", + "synonym": [ + "basal plate midbrain", + "basal plate midbrain region" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/midbrainCerebralAqueduct.jsonld b/instances/latest/terminologies/UBERONParcellation/midbrainCerebralAqueduct.jsonld index c4f6202c3..fbdd6ccb0 100644 --- a/instances/latest/terminologies/UBERONParcellation/midbrainCerebralAqueduct.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/midbrainCerebralAqueduct.jsonld @@ -4,29 +4,27 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/midbrainCerebralAqueduct", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Midbrain cerebral aqueduct' is a brain ventricle. It is part of the midbrain.", - "description": "Part of ventricular system of brain consisting of a narrow channel in the midbrain connecting the third and fourth ventricles. (Maryann Martone)", + "definition": "Is a brain ventricle. Is part of the midbrain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002289) ('is_a' and 'relationship')]", + "description": "Part of ventricular system of brain consisting of a narrow channel in the midbrain connecting the third and fourth ventricles. (Maryann Martone) [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002289)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101977", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002289#cerebral-aqueduct", "name": "midbrain cerebral aqueduct", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002289", "synonym": [ - "aqueduct", - "Aqueduct (Sylvius)", + "aqueduct (Sylvius)", "aqueduct of midbrain", "aqueduct of Sylvius", "aqueductus mesencephali", "cerebral aquaduct", "cerebral aqueduct", - "Cerebral aqueduct of Sylvius", - "cerebral aqueduct proper", + "cerebral aqueduct of Sylvius", "medial tectal ventricle", "mesencephalic duct", "mesencephalic ventricle", - "mesencephalic vesicle", "midbrain cerebral aqueduct", "midbrain ventricle", "Sylvian aqueduct", "tectal ventricle" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/midbrainNeuromere.jsonld b/instances/latest/terminologies/UBERONParcellation/midbrainNeuromere.jsonld new file mode 100644 index 000000000..8a6cac446 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/midbrainNeuromere.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/midbrainNeuromere", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a neuromere. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0014776)]", + "description": "A neuromere that is part of the presumptive midbrain. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0014776)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014776#midbrain-neuromere", + "name": "midbrain neuromere", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014776", + "synonym": [ + "mesomere of nervous system", + "neuromere of mesomere group" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/midbrainReticularFormation.jsonld b/instances/latest/terminologies/UBERONParcellation/midbrainReticularFormation.jsonld index 017d6c754..d98ab38a0 100644 --- a/instances/latest/terminologies/UBERONParcellation/midbrainReticularFormation.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/midbrainReticularFormation.jsonld @@ -4,19 +4,15 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/midbrainReticularFormation", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Midbrain reticular formation' is a nuclear complex of neuraxis and gray matter of midbrain. It is part of the midbrain tegmentum and reticular formation.", - "description": "Part of the reticular formation located in the midbrain tegmentum", + "definition": "Is a nuclear complex of neuraxis and gray matter of midbrain. Is part of the midbrain tegmentum and the reticular formation. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002639) ('is_a' and 'relationship')]", + "description": "Part of the reticular formation located in the midbrain tegmentum. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002639)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106943", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002639#midbrain-reticular-formation-1", "name": "midbrain reticular formation", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002639", "synonym": [ - "formatio reticularis mesencephali", - "formatio reticularis tegmentalis", - "formatio reticularis tegmenti mesencephali", - "MBRF", "reticular formation of midbrain", - "substantia reticularis mesencephali", "tegmental reticular formation" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/midbrainSubarachnoidSpace.jsonld b/instances/latest/terminologies/UBERONParcellation/midbrainSubarachnoidSpace.jsonld new file mode 100644 index 000000000..8519fee2d --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/midbrainSubarachnoidSpace.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/midbrainSubarachnoidSpace", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a subarachnoid space. Is part of the midbrain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0005217) ('is_a' and 'relationship')]", + "description": "A subarachnoid space that is part of a midbrain. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0005217)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005217#midbrain-subarachnoid-space", + "name": "midbrain subarachnoid space", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005217", + "synonym": [ + "subarachnoid space midbrain" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/midbrainTectum.jsonld b/instances/latest/terminologies/UBERONParcellation/midbrainTectum.jsonld index 86084163a..114b9129a 100644 --- a/instances/latest/terminologies/UBERONParcellation/midbrainTectum.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/midbrainTectum.jsonld @@ -4,20 +4,17 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/midbrainTectum", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Midbrain tectum' is a regional part of brain. It is part of the midbrain.", - "description": "Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei (MM).The dorsal topographic division of the midbrain, essentially dorsal to the cerebral aqueduct and dominated in mammals by the superior colliculi and inferior colliculi, and contrasting with the ventral topographic division, the tegmentum. Schwalbe (1881, p. 454) apparently introduced the term as currently used, \"Decke des Mittelhirns\" in the original German; also see Cajal (1899-1904, vol 2, pt 1, p. 449), \"el techo\" and \"la porci\u00c3\u00b3n tectal\" in the original Spanish. Also see Williams & Warwick (1980, p. 940), International Anatomical Nomenclature Committee (1983, p. A68), Federative Committee on Anatomical Terminology (1998, A14.1.06.601). Common synonym is corpora quadrigemina (Winslow, 1733).", + "definition": "Is a regional part of brain. Is part of the midbrain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002314) ('is_a' and 'relationship')]", + "description": "Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei (MM). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002314)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106950", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002314#midbrain-tectum", "name": "midbrain tectum", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002314", "synonym": [ - "Tec", - "tectum", - "Neuraxis tectum", "mesencephalic tectum", - "tectum mesencephali", - "tectum mesencephalicum", - "tectum of midbrain", - "t. mesencephali" + "neuraxis tectum", + "tectum", + "tectum mesencephali" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/midbrainTegmentum.jsonld b/instances/latest/terminologies/UBERONParcellation/midbrainTegmentum.jsonld index c015486bd..41386917b 100644 --- a/instances/latest/terminologies/UBERONParcellation/midbrainTegmentum.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/midbrainTegmentum.jsonld @@ -4,18 +4,15 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/midbrainTegmentum", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Midbrain tegmentum' is a regional part of brain. It is part of the midbrain and brainstem.", - "description": "Subdivision of the midbrain lying anterior to the tectum and posterior to the substantia nigra and cerebral peduncle.", + "definition": "Is a regional part of brain. Is part of the midbrain and the brainstem. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001943) ('is_a' and 'relationship')]", + "description": "Ventral part of the midbrain, separated from the hindbrain by the isthmus. Subdivision of the midbrain lying anterior to the tectum and posterior to the substantia nigra and cerebral peduncle The part of the midbrain extending from the substantia nigra to the cerebral aqueduct in a horizontal section of the midbrain. It forms the floor of the midbrain that surrounds the cerebral aqueduct. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001943)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106951", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001943#midbrain-tegmentum-1", "name": "midbrain tegmentum", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001943", "synonym": [ - "mesencephalic tegmentum", - "MTg", - "tegmentum", "tegmentum mesencephali", - "tegmentum mesencephalicum", "tegmentum of midbrain" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/midbrainhindbrainBoundary.jsonld b/instances/latest/terminologies/UBERONParcellation/midbrainhindbrainBoundary.jsonld index 1774c44d5..0337c0cf8 100644 --- a/instances/latest/terminologies/UBERONParcellation/midbrainhindbrainBoundary.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/midbrainhindbrainBoundary.jsonld @@ -2,13 +2,19 @@ "@context": { "@vocab": "https://openminds.om-i.org/props/" }, - "@id": "https://openminds.om-i.org/instances/UBERONParcellation/midbrainhindbrainBoundary", + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/midbrainHindbrainBoundary", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Midbrain-hindbrain boundary' is part of the brain.", - "description": "The part of the brain that is the morphological boundary between the midbrain and hindbrain and that is the location of an organizing center which patterns the midbrain and hindbrain primordia of the neural plate.", + "definition": "Is part of the brain. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003052)]", + "description": "The part of the brain that is the morphological boundary between the midbrain and hindbrain and that is the location of an organizing center which patterns the midbrain and hindbrain primordia of the neural plate. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003052)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0728815", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003052#midbrain-hindbrain-boundary", "name": "midbrain-hindbrain boundary", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003052", - "synonym": null + "synonym": [ + "MHB", + "mid-hindbrain boundary", + "mid-hindbrain junction", + "midbrain hindbrain boundary" + ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/midlineColumn.jsonld b/instances/latest/terminologies/UBERONParcellation/midlineColumn.jsonld new file mode 100644 index 000000000..7c7bdf0b2 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/midlineColumn.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/midlineColumn", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an anatomical entity. Is part of the medullary reticular formation. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000241) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2000241#midline-column", + "name": "midline column", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2000241", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/midlineNuclearGroup.jsonld b/instances/latest/terminologies/UBERONParcellation/midlineNuclearGroup.jsonld index 9f0350ceb..cadf9ccd7 100644 --- a/instances/latest/terminologies/UBERONParcellation/midlineNuclearGroup.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/midlineNuclearGroup.jsonld @@ -4,24 +4,21 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/midlineNuclearGroup", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Midline nuclear group' is a nucleus of dorsal thalamus.", - "description": "The midline nuclear group (or midline thalamic nuclei) a region of the thalamus consisting of the following nuclei: paraventricular nucleus of thalamus (nucleus paraventricularis thalami) - not to be confused with paraventricular nucleus of hypothalamus paratenial nucleus (nucleus parataenialis) reuniens nucleus (nucleus reuniens) rhomboidal nucleus (nucleus commissuralis rhomboidalis) subfascicular nucleus (nucleus subfascicularis) [WP,unvetted].", + "definition": "Is a nucleus of dorsal thalamus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002705)]", + "description": "The midline nuclear group (or midline thalamic nuclei) a region of the thalamus consisting of the following nuclei: paraventricular nucleus of thalamus (nucleus paraventricularis thalami) - not to be confused with paraventricular nucleus of hypothalamus paratenial nucleus (nucleus parataenialis) reuniens nucleus (nucleus reuniens) rhomboidal nucleus (nucleus commissuralis rhomboidalis) subfascicular nucleus (nucleus subfascicularis). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002705)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106971", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002705#midline-nuclear-group-1", "name": "midline nuclear group", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002705", "synonym": [ "median nuclei of thalamus", - "midline group of the dorsal thalamus", "midline nuclear group", "midline nuclear group of thalamus", "midline nuclei of thalamus", "midline thalamic group", - "midline thalamic nuclear group", - "midline thalamic nuclei", "nuclei mediani (thalami)", "nuclei mediani thalami", - "nucleus mediani thalami", "periventricular nuclei of thalamus" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/mossyFiber.jsonld b/instances/latest/terminologies/UBERONParcellation/mossyFiber.jsonld new file mode 100644 index 000000000..42baed6a4 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/mossyFiber.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/mossyFiber", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is part of the corpus cerebelli and the valvula cerebelli. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2002210)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2002210#mossy-fiber", + "name": "mossy fiber", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2002210", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/muscleSpindle.jsonld b/instances/latest/terminologies/UBERONParcellation/muscleSpindle.jsonld new file mode 100644 index 000000000..a679b1dc8 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/muscleSpindle.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/muscleSpindle", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an anatomical entity. Is part of the nervous system. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003718) ('is_a' and 'relationship')]", + "description": "The sensory organs in muscle that are involved in the stretch reflex. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003718)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003718#muscle-spindle", + "name": "muscle spindle", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003718", + "synonym": [ + "neuromuscular spindle" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/myelin.jsonld b/instances/latest/terminologies/UBERONParcellation/myelin.jsonld new file mode 100644 index 000000000..a81e27664 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/myelin.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/myelin", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an anatomical entity and anatomical structure. Is part of the nervous system. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000345) ('is_a' and 'relationship')]", + "description": "A dielectric (electrically insulating) material consisting of protein and fat that forms a layer, the myelin sheath, usually around only the axon of a neuron. Myelin is about 40 % water; the dry mass of myelin is about 70 - 85 % lipids and about 15 - 30 % proteins. Some of the proteins that make up myelin are myelin basic protein (MBP), myelin oligodendrocyte glycoprotein (MOG), and proteolipid protein (PLP). The primary lipid of myelin is a glycolipid called galactocerebroside (GalC). The intertwining hydrocarbon chains of sphingomyelin serve to strengthen the myelin sheath. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000345)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000345#myelin", + "name": "myelin", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000345", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/neuralDecussation.jsonld b/instances/latest/terminologies/UBERONParcellation/neuralDecussation.jsonld new file mode 100644 index 000000000..cc11c7dd8 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/neuralDecussation.jsonld @@ -0,0 +1,20 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/neuralDecussation", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a neuron projection bundle and central nervous system cell part cluster. Is part of the white matter. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007418) ('is_a' and 'relationship')]", + "description": "Nerve fibers crossing the midline of the neuraxis relative to their point of origin, on a course to from one level of the nervous system to another. (CUMBO, Heimer, L. The Human Brain, 2nd ed., 1995, pg 6) [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007418)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007418#neural-decussation", + "name": "neural decussation", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007418", + "synonym": [ + "decussation of neuraxis", + "neuraxis chiasm", + "neuraxis chiasma", + "neuraxis decussation" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/neuralGlomerulus.jsonld b/instances/latest/terminologies/UBERONParcellation/neuralGlomerulus.jsonld new file mode 100644 index 000000000..023da40a3 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/neuralGlomerulus.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/neuralGlomerulus", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a neuropil. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001047)]", + "description": "Large synaptic bouton found in areas like olfactory bulb, cerebellar cortex and thalamus, that contacts many post-synaptic targets. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001047)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001047#neural-glomerulus", + "name": "neural glomerulus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001047", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/neuralTissue.jsonld b/instances/latest/terminologies/UBERONParcellation/neuralTissue.jsonld new file mode 100644 index 000000000..201dcd6cc --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/neuralTissue.jsonld @@ -0,0 +1,19 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/neuralTissue", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an anatomical entity. Is part of the nervous system. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003714) ('is_a' and 'relationship')]", + "description": "Portion of tissue in the nervous system which consists of neurons and glial cells, and may also contain parts of the vasculature. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003714)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003714#neural-tissue", + "name": "neural tissue", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003714", + "synonym": [ + "nerve tissue", + "nervous tissue", + "portion of neural tissue" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/neuralTubeAlarPlate.jsonld b/instances/latest/terminologies/UBERONParcellation/neuralTubeAlarPlate.jsonld new file mode 100644 index 000000000..aaff5f8a7 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/neuralTubeAlarPlate.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/neuralTubeAlarPlate", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an anatomical entity. Is part of the neural tube mantle layer. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0005882) ('is_a' and 'relationship')]", + "description": "The mantle layer of the neural tube that lies dorsal to the sulcus limitans and contains primarily sensory neurons and interneurons involved in communication of sensory impulses. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0005882)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005882#neural-tube-alar-plate", + "name": "neural tube alar plate", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005882", + "synonym": [ + "alar plate", + "alar plate of neural tube" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/neuralTubeBasalPlate.jsonld b/instances/latest/terminologies/UBERONParcellation/neuralTubeBasalPlate.jsonld new file mode 100644 index 000000000..7b8f8eab1 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/neuralTubeBasalPlate.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/neuralTubeBasalPlate", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is part of the neural tube mantle layer. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004064)]", + "description": "The region of the mantle layer of the neural tube that lies ventral to the sulcus limitans and contains primarily motor neurons and interneurons. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004064)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004064#neural-tube-basal-plate", + "name": "neural tube basal plate", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004064", + "synonym": [ + "basal plate", + "basal plate of neural tube" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/neuralTubeDerivedBrain.jsonld b/instances/latest/terminologies/UBERONParcellation/neuralTubeDerivedBrain.jsonld new file mode 100644 index 000000000..f5a0962aa --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/neuralTubeDerivedBrain.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/neuralTubeDerivedBrain", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a brain. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0008823)]", + "description": "A brain that develops from a neural tube. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0008823)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0008823#neural-tube-derived-brain", + "name": "neural tube derived brain", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0008823", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/neuroendocrineGland.jsonld b/instances/latest/terminologies/UBERONParcellation/neuroendocrineGland.jsonld new file mode 100644 index 000000000..6b6c66659 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/neuroendocrineGland.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/neuroendocrineGland", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an anatomical entity. Is part of the nervous system. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0010133) ('is_a' and 'relationship')]", + "description": "Any of the organized aggregations of cells that function as secretory or excretory organs and that release hormones in response to neural stimuli. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0010133)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0010133#neuroendocrine-gland", + "name": "neuroendocrine gland", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0010133", + "synonym": [ + "neuroendocrine system gland" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/neurohypophysis.jsonld b/instances/latest/terminologies/UBERONParcellation/neurohypophysis.jsonld index 73a9645e4..c7209eb20 100644 --- a/instances/latest/terminologies/UBERONParcellation/neurohypophysis.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/neurohypophysis.jsonld @@ -4,11 +4,26 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/neurohypophysis", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Neurohypophysis' is a gland of diencephalon and secretory circumventricular organ. It is part of the pituitary gland.", - "description": "The posterior part of the pituitary gland that secretes hormones involved in blood pressure regulation such as oxytocin and antidiuretic hormon.", + "definition": "Is a gland of diencephalon and secretory circumventricular organ. Is part of the pituitary gland. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002198) ('is_a' and 'relationship')]", + "description": "The posterior part of the pituitary gland that secretes hormones involved in blood pressure regulation such as oxytocin and antidiuretic hormon. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002198)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107477", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002198#neurohypophysis-1", "name": "neurohypophysis", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002198", - "synonym": null + "synonym": [ + "infundibular process", + "lobus nervosus neurohypophysis", + "lobus posterior (glandula pituitaria)", + "lobus posterior hypophysis", + "neural lobe", + "neural lobe of pituitary", + "neural lobe of pituitary gland", + "neuro hypophysis", + "neurohypophysis", + "pituitary gland, posterior lobe", + "posterior lobe of pituitary", + "posterior lobe of pituitary gland", + "posterior pituitary" + ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/neuromere.jsonld b/instances/latest/terminologies/UBERONParcellation/neuromere.jsonld new file mode 100644 index 000000000..cc9e8c9ac --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/neuromere.jsonld @@ -0,0 +1,19 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/neuromere", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a segmental subdivision of nervous system. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004731)]", + "description": "A transverse unitary subdivision of the neural tube that shares a common dorsoventral structure (floor, basal, alar, and roof plates), but each having differential molecular identities and fates; they comprise the secondary prosencephalon, diencephalon (prosomeres), the midbrain (mesomeres), and the hindbrain (rhombomeres). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004731)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004731#neuromere", + "name": "neuromere", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004731", + "synonym": [ + "neural tube metameric segment", + "neural tube segment", + "neuromere" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/neuronProjectionBundle.jsonld b/instances/latest/terminologies/UBERONParcellation/neuronProjectionBundle.jsonld new file mode 100644 index 000000000..6f49e4bbe --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/neuronProjectionBundle.jsonld @@ -0,0 +1,19 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/neuronProjectionBundle", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an anatomical entity. Is part of the nervous system. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000122) ('is_a' and 'relationship')]", + "description": "A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synapses. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000122)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000122#neuron-projection-bundle", + "name": "neuron projection bundle", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000122", + "synonym": [ + "funiculus", + "nerve fiber bundle", + "neural fiber bundle" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/neuronProjectionBundleConnectingEyeWithBrain.jsonld b/instances/latest/terminologies/UBERONParcellation/neuronProjectionBundleConnectingEyeWithBrain.jsonld new file mode 100644 index 000000000..a23be355c --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/neuronProjectionBundleConnectingEyeWithBrain.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/neuronProjectionBundleConnectingEyeWithBrain", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a neuron projection bundle. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004904)]", + "description": "A neuron projection bundle that connects the retina or its analog in the eye with the brain. This includes the vertebrate optic nerve (not truly a nerve) as well as analogous structures such as the Bolwig nerve in Drosophila. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004904)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004904#neuron-projection-bundle-connecting-eye-with-brain", + "name": "neuron projection bundle connecting eye with brain", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004904", + "synonym": [ + "optic nerve (generic)" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/neuropil.jsonld b/instances/latest/terminologies/UBERONParcellation/neuropil.jsonld new file mode 100644 index 000000000..f14f822a5 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/neuropil.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/neuropil", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a central nervous system cell part cluster. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002606)]", + "description": "A cluster of neurites that is part of a nervous system and forms a network of dendrites and axons where synapses are present and in which neuronal somata do not occur. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002606)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002606#neuropil", + "name": "neuropil", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002606", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/nidopallium.jsonld b/instances/latest/terminologies/UBERONParcellation/nidopallium.jsonld new file mode 100644 index 000000000..9fd91508d --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/nidopallium.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/nidopallium", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a regional part of brain. Is part of the pallium. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007334) ('is_a' and 'relationship')]", + "description": "The nidopallium, meaning nested pallium, is the region of the avian brain that is used mostly for some types of executive functions but also other higher cognitive tasks. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007334)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007334#nidopallium", + "name": "nidopallium", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007334", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/nodosalPlacode.jsonld b/instances/latest/terminologies/UBERONParcellation/nodosalPlacode.jsonld new file mode 100644 index 000000000..cf3d9a1eb --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/nodosalPlacode.jsonld @@ -0,0 +1,19 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/nodosalPlacode", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an epibranchial placode. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0009126)]", + "description": "Caudalmost epibranchial placode. Associated with 3rd branchial cleft. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0009126)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0009126#nodosal-placode", + "name": "nodosal placode", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0009126", + "synonym": [ + "epibranchial placode 3", + "nodose placode", + "vagal epibranchial placode" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/nuclearComplexOfNeuraxis.jsonld b/instances/latest/terminologies/UBERONParcellation/nuclearComplexOfNeuraxis.jsonld new file mode 100644 index 000000000..96fe5e8c6 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/nuclearComplexOfNeuraxis.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/nuclearComplexOfNeuraxis", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a gray matter. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007245)]", + "description": "Gray matter of the central nervous system which is a collection of clustered nuclei. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007245)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007245#nuclear-complex-of-neuraxis", + "name": "nuclear complex of neuraxis", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007245", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/occipitalPole.jsonld b/instances/latest/terminologies/UBERONParcellation/occipitalPole.jsonld new file mode 100644 index 000000000..e52a8fd1c --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/occipitalPole.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/occipitalPole", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a pole of cerebral hemisphere. Is part of the occipital lobe. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002902) ('is_a' and 'relationship')]", + "description": "The anterior end of the hemisphere is named the frontal pole. The posterior end is named the occipital pole. The anterior end of the temporal lobe, the temporal pole. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002902)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002902#occipital-pole-1", + "name": "occipital pole", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002902", + "synonym": [ + "polus occipitalis" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/occipitofrontalFasciculus.jsonld b/instances/latest/terminologies/UBERONParcellation/occipitofrontalFasciculus.jsonld new file mode 100644 index 000000000..cca6c83dc --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/occipitofrontalFasciculus.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/occipitofrontalFasciculus", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a cerebral nerve fasciculus. Is part of the white matter of telencephalon and the forebrain ipsilateral fiber tracts. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0034754) ('is_a' and 'relationship')]", + "description": "The occipitofrontal fasciculus passes backward from the frontal lobe, along the lateral border of the caudate nucleus, and on the medial aspect of the corona radiata; its fibers radiate in a fan-like manner and pass into the occipital and temporal lobes lateral to the posterior and inferior cornua. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0034754)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0034754#occipitofrontal-fasciculus", + "name": "occipitofrontal fasciculus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034754", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/oculomotorDivisionOfOculomotorNuclearComplex.jsonld b/instances/latest/terminologies/UBERONParcellation/oculomotorDivisionOfOculomotorNuclearComplex.jsonld new file mode 100644 index 000000000..3e7bb8a49 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/oculomotorDivisionOfOculomotorNuclearComplex.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/oculomotorDivisionOfOculomotorNuclearComplex", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a nuclear complex of neuraxis and gray matter of midbrain. Is part of the oculomotor nuclear complex. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0014523) ('is_a' and 'relationship')]", + "description": "A division of oculomotor nuclear complex that exists in organisms with electric organs which is responsible for eye movements. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0014523)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014523#oculomotor-division-of-oculomotor-nuclear-complex", + "name": "oculomotor division of oculomotor nuclear complex", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014523", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/oculomotorNuclearComplex.jsonld b/instances/latest/terminologies/UBERONParcellation/oculomotorNuclearComplex.jsonld index 4c0b73a33..1609acdd1 100644 --- a/instances/latest/terminologies/UBERONParcellation/oculomotorNuclearComplex.jsonld +++ b/instances/latest/terminologies/UBERONParcellation/oculomotorNuclearComplex.jsonld @@ -4,26 +4,23 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/oculomotorNuclearComplex", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Oculomotor nuclear complex' is a nuclear complex of neuraxis and gray matter of midbrain. It is part of the midbrain tegmentum.", - "description": "Nuclear complex containing subnuclei that give rise to the axons of the occulomotor nerve, both motor and parasympathetic fibers, situated at the midline at the level of the superior colliculus in the midbrain tegmentum (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 533-534).", + "definition": "Is a nuclear complex of neuraxis and gray matter of midbrain. Is part of the midbrain tegmentum. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001715) ('is_a' and 'relationship')]", + "description": "Nuclear complex containing subnuclei that give rise to the axons of the occulomotor nerve, both motor and parasympathetic fibers, situated at the midline at the level of the superior colliculus in the midbrain tegmentum (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 533-534). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001715)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107899", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001715#oculomotor-nuclear-complex-1", "name": "oculomotor nuclear complex", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001715", "synonym": [ - "3N", - "motor nucleus III", - "nIII", "nucleus nervi oculomotorii", - "nucleus oculomotorius", + "nucleus nervi oculomotorii", "nucleus of oculomotor nerve", "nucleus of oculomotor nuclear complex", "nucleus of third cranial nerve", "oculomotor III nuclear complex", "oculomotor III nucleus", - "oculomotor motornucleus", "oculomotor nucleus", "OM", "third cranial nerve nucleus" ] } + diff --git a/instances/latest/terminologies/UBERONParcellation/olivaryBody.jsonld b/instances/latest/terminologies/UBERONParcellation/olivaryBody.jsonld new file mode 100644 index 000000000..417ecdd52 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/olivaryBody.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/olivaryBody", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is part of the medulla oblongata. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000128)]", + "description": "Prominent oval structure in the medulla oblongata, present in pairs, the lower portion of the brainstem. They contain the olivary nuclei. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000128)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000128#olivary-body", + "name": "olivary body", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000128", + "synonym": [ + "olive body" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/olivocochlearBundle.jsonld b/instances/latest/terminologies/UBERONParcellation/olivocochlearBundle.jsonld new file mode 100644 index 000000000..a241a3e9c --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/olivocochlearBundle.jsonld @@ -0,0 +1,22 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/olivocochlearBundle", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a tract of brain. Is part of the pontine tegmentum. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002775) ('is_a' and 'relationship')]", + "description": "A pathway that terminates on the hair cells of the cochlea or equivalent organ in the inner ear. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002775)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002775#olivocochlear-bundle-1", + "name": "olivocochlear bundle", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002775", + "synonym": [ + "bundle of Rasmussen", + "efferent cochlear bundle", + "efferent cochlear pathway", + "olivocochlear bundle of rasmussen", + "olivocochlear tract", + "tractus olivocochlearis" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/ommatidium.jsonld b/instances/latest/terminologies/UBERONParcellation/ommatidium.jsonld new file mode 100644 index 000000000..c04df37ea --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/ommatidium.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/ommatidium", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an arthropod sensillum. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000971)]", + "description": "The smallest morphological and functional unit of the compound eye that consists of a usually limited and often constant number of rhabdomeric photoreceptor cells, cornea-secreting epithelial cells, and interommatidial pigment cells, and may additionally contain crystalline cone cells. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000971)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000971#ommatidium", + "name": "ommatidium", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000971", + "synonym": [ + "omatidium" + ] +} + diff --git a/instances/latest/terminologies/UBERONParcellation/operculumOfBrain.jsonld b/instances/latest/terminologies/UBERONParcellation/operculumOfBrain.jsonld new file mode 100644 index 000000000..d78e1793d --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/operculumOfBrain.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/operculumOfBrain", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a regional part of brain. Is part of the frontal lobe. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0010262) ('is_a' and 'relationship')]", + "description": "The most posterior portion of the inferior frontal gyrus of the frontal lobe in the brain. In an axial plane, the Sylvian fissure extends from the operculum posteriorly to divide the frontal from the temporal lobe. Broca's area is a notable part of the operculum, which plays a key role in conversation or speech production, reading and writing. Its vascular supply comes from the M3 branches of the middle cerebral artery. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0010262)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0010262#operculum-of-brain", + "name": "operculum of brain", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0010262", + "synonym": null +} + diff --git a/instances/latest/terminologies/UBERONParcellation/ophthalmicPlexus.jsonld b/instances/latest/terminologies/UBERONParcellation/ophthalmicPlexus.jsonld new file mode 100644 index 000000000..acb7b0b54 --- /dev/null +++ b/instances/latest/terminologies/UBERONParcellation/ophthalmicPlexus.jsonld @@ -0,0 +1,20 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/ophthalmicPlexus", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a nerve plexus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0011194)]", + "description": "An autonomic plexus, entering the orbit in company with the ophthalmic artery, derived from the internal carotid plexus. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0011194)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0011194#ophthalmic-plexus", + "name": "ophthalmic plexus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0011194", + "synonym": [ + "ophthalmic nerve plexus", + "ophthalmic plexus", + "opthalmic plexus", + "plexus ophthalmicus" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/MeissnersCorpuscle.jsonld b/instances/v3.0/terminologies/UBERONParcellation/MeissnersCorpuscle.jsonld new file mode 100644 index 000000000..d5ce7b9ee --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/MeissnersCorpuscle.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/MeissnersCorpuscle", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a mechanoreceptor. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0012450)]", + "description": "A type of nerve ending in the skin that is responsible for sensitivity to light touch. In particular, they have highest sensitivity (lowest threshold) when sensing vibrations lower than 50 Hertz. They are rapidly adaptive receptors. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0012450)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0012450#meissner-s-corpuscle", + "name": "Meissner's corpuscle", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0012450", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/MeyersLoopOfOpticRadiation.jsonld b/instances/v3.0/terminologies/UBERONParcellation/MeyersLoopOfOpticRadiation.jsonld new file mode 100644 index 000000000..9728363e8 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/MeyersLoopOfOpticRadiation.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/MeyersLoopOfOpticRadiation", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a radiation of cerebral hemisphere. Is part of the optic radiation. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035935) ('is_a' and 'relationship')]", + "description": "Part of the optic radiation which sweeps back on itself into the temporal lobe, just lateral to the temporal horn of the lateral ventricle.. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035935)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035935#meyer-s-loop-of-optic-radiation", + "name": "Meyer's loop of optic radiation", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035935", + "synonym": [ + "inferior optic radiation", + "Meyer's loop" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/medullaryReticularFormation.jsonld b/instances/v3.0/terminologies/UBERONParcellation/medullaryReticularFormation.jsonld index 8b9ebd26e..b4fecc847 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/medullaryReticularFormation.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/medullaryReticularFormation.jsonld @@ -4,8 +4,8 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/medullaryReticularFormation", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Medullary reticular formation' is a nuclear complex of neuraxis and gray matter of hindbrain. It is part of the medulla oblongata and reticular formation.", - "description": "Part of reticular formation located in the medulla", + "definition": "Is a nuclear complex of neuraxis and gray matter of hindbrain. Is part of the medulla oblongata and the reticular formation. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002559) ('is_a' and 'relationship')]", + "description": "The reticular formation is a series of brain nuclei located in the medulla oblongata. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002559)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106744", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002559#medullary-reticular-formation-1", "name": "medullary reticular formation", @@ -13,12 +13,10 @@ "synonym": [ "bulb reticular formation", "bulbar reticular formation", - "formatio reticularis myelencephali", "medulla oblongata reticular formation", "medulla oblonmgata reticular formation", "medullary reticular nucleus", "metepencephalon reticular formation", - "reticular formation", "reticular formation of bulb", "reticular formation of medulla", "reticular formation of medulla oblongata", @@ -27,3 +25,4 @@ "rhombencephalic reticular formation" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/meningealCluster.jsonld b/instances/v3.0/terminologies/UBERONParcellation/meningealCluster.jsonld new file mode 100644 index 000000000..0e3eb84a2 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/meningealCluster.jsonld @@ -0,0 +1,19 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/meningealCluster", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is an anatomical entity. Is part of the central nervous system. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0010743) ('is_a' and 'relationship')]", + "description": "The collection of all meningeal layers that line a central nervous system. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0010743)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0010743#meningeal-cluster", + "name": "meningeal cluster", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0010743", + "synonym": [ + "cerebral meninges", + "cluster of meninges", + "meninges" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/meninx.jsonld b/instances/v3.0/terminologies/UBERONParcellation/meninx.jsonld new file mode 100644 index 000000000..6b6c3d169 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/meninx.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/meninx", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is part of the meningeal cluster. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002360)]", + "description": "Membrane organ that surrounds the brain and the spinal cord. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002360)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002360#meninx-1", + "name": "meninx", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002360", + "synonym": [ + "layer of meninges", + "meningeal layer" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/meninxOfHindbrain.jsonld b/instances/v3.0/terminologies/UBERONParcellation/meninxOfHindbrain.jsonld index b07a45670..f06aed51d 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/meninxOfHindbrain.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/meninxOfHindbrain.jsonld @@ -4,11 +4,16 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/meninxOfHindbrain", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Meninx of hindbrain' is a brain meninx. It is part of the hindbrain.", - "description": null, + "definition": "Is a brain meninx. Is part of the hindbrain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003291) ('is_a' and 'relationship')]", + "description": "A meninx that is part of a hindbrain. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003291)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0736366", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003291#meninx-of-hindbrain", "name": "meninx of hindbrain", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003291", - "synonym": null + "synonym": [ + "hindbrain meninges", + "hindbrain meninx", + "meninges of hindbrain" + ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/meninxOfMidbrain.jsonld b/instances/v3.0/terminologies/UBERONParcellation/meninxOfMidbrain.jsonld new file mode 100644 index 000000000..b7aee717b --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/meninxOfMidbrain.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/meninxOfMidbrain", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a brain meninx. Is part of the midbrain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003288) ('is_a' and 'relationship')]", + "description": "A meninx that is part of a midbrain. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003288)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003288#meninx-of-midbrain", + "name": "meninx of midbrain", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003288", + "synonym": [ + "midbrain meninx" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/mesentericPlexus.jsonld b/instances/v3.0/terminologies/UBERONParcellation/mesentericPlexus.jsonld new file mode 100644 index 000000000..0b6a5d844 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/mesentericPlexus.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/mesentericPlexus", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is an autonomic nerve plexus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035771)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035771#mesenteric-plexus", + "name": "mesenteric plexus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035771", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/mesomere1.jsonld b/instances/v3.0/terminologies/UBERONParcellation/mesomere1.jsonld new file mode 100644 index 000000000..1d2962497 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/mesomere1.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/mesomere1", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a midbrain neuromere. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0019272)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0019272#mesomere-1", + "name": "mesomere 1", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0019272", + "synonym": [ + "mesomere M1" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/mesomere2.jsonld b/instances/v3.0/terminologies/UBERONParcellation/mesomere2.jsonld new file mode 100644 index 000000000..0cca68cd4 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/mesomere2.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/mesomere2", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a midbrain neuromere. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0019274)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0019274#mesomere-2", + "name": "mesomere 2", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0019274", + "synonym": [ + "mesomere 2 (preisthmus or caudal midbrain)", + "mesomere M2" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/mesopallium.jsonld b/instances/v3.0/terminologies/UBERONParcellation/mesopallium.jsonld new file mode 100644 index 000000000..b6f9b7314 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/mesopallium.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/mesopallium", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a regional part of brain. Is part of the pallium. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007349) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007349#mesopallium", + "name": "mesopallium", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007349", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/metathalamus.jsonld b/instances/v3.0/terminologies/UBERONParcellation/metathalamus.jsonld index ab378a237..3bdf22b69 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/metathalamus.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/metathalamus.jsonld @@ -4,19 +4,16 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/metathalamus", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Metathalamus' is a nucleus of dorsal thalamus.", - "description": "The metathalamus is a composite structure of the thalamus, consisting of the medial geniculate nucleus and the lateral geniculate nucleus. [WP,unvetted].", + "definition": "Is a nucleus of dorsal thalamus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002704)]", + "description": "The metathalamus is a composite structure of the thalamus, consisting of the medial geniculate nucleus and the lateral geniculate nucleus. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002704)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106839", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002704#metathalamus-1", "name": "metathalamus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002704", "synonym": [ - "corpora geniculata", - "geniculate group of dorsal thalamus", "geniculate group of the dorsal thalamus", "geniculate thalamic group", - "geniculate thalamic nuclear group (metathalamus)", - "MTh", "nuclei metathalami" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/midbrain.jsonld b/instances/v3.0/terminologies/UBERONParcellation/midbrain.jsonld index 358259616..510268806 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/midbrain.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/midbrain.jsonld @@ -4,14 +4,12 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/midbrain", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Midbrain' is a regional part of brain.", - "description": "Part of the brain that develops from the middle of the 3 primary vesicles of the embryonic neural tube, between the prosencephalon and rhombencephalon, later forming the tectum and cerebral peduncles. (CSP)", + "definition": "Is a regional part of brain. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001891)]", + "description": "The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001891)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106935", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001891#midbrain-1", "name": "midbrain", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001891", - "synonym": [ - "MB", - "Mesencephalon" - ] + "synonym": null } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/midbrainBasalPlate.jsonld b/instances/v3.0/terminologies/UBERONParcellation/midbrainBasalPlate.jsonld new file mode 100644 index 000000000..54de23505 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/midbrainBasalPlate.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/midbrainBasalPlate", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a gray matter. Is part of the midbrain mantle layer. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0010285) ('is_a' and 'relationship')]", + "description": "Portion of tissue that is dorsolateral to the floor plate and part of the midbrain. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0010285)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0010285#midbrain-basal-plate", + "name": "midbrain basal plate", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0010285", + "synonym": [ + "basal plate midbrain", + "basal plate midbrain region" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/midbrainCerebralAqueduct.jsonld b/instances/v3.0/terminologies/UBERONParcellation/midbrainCerebralAqueduct.jsonld index 088b04d1c..717b5198d 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/midbrainCerebralAqueduct.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/midbrainCerebralAqueduct.jsonld @@ -4,29 +4,27 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/midbrainCerebralAqueduct", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Midbrain cerebral aqueduct' is a brain ventricle. It is part of the midbrain.", - "description": "Part of ventricular system of brain consisting of a narrow channel in the midbrain connecting the third and fourth ventricles. (Maryann Martone)", + "definition": "Is a brain ventricle. Is part of the midbrain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002289) ('is_a' and 'relationship')]", + "description": "Part of ventricular system of brain consisting of a narrow channel in the midbrain connecting the third and fourth ventricles. (Maryann Martone) [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002289)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101977", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002289#cerebral-aqueduct", "name": "midbrain cerebral aqueduct", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002289", "synonym": [ - "aqueduct", - "Aqueduct (Sylvius)", + "aqueduct (Sylvius)", "aqueduct of midbrain", "aqueduct of Sylvius", "aqueductus mesencephali", "cerebral aquaduct", "cerebral aqueduct", - "Cerebral aqueduct of Sylvius", - "cerebral aqueduct proper", + "cerebral aqueduct of Sylvius", "medial tectal ventricle", "mesencephalic duct", "mesencephalic ventricle", - "mesencephalic vesicle", "midbrain cerebral aqueduct", "midbrain ventricle", "Sylvian aqueduct", "tectal ventricle" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/midbrainNeuromere.jsonld b/instances/v3.0/terminologies/UBERONParcellation/midbrainNeuromere.jsonld new file mode 100644 index 000000000..1afbf33f8 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/midbrainNeuromere.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/midbrainNeuromere", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a neuromere. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0014776)]", + "description": "A neuromere that is part of the presumptive midbrain. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0014776)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014776#midbrain-neuromere", + "name": "midbrain neuromere", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014776", + "synonym": [ + "mesomere of nervous system", + "neuromere of mesomere group" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/midbrainReticularFormation.jsonld b/instances/v3.0/terminologies/UBERONParcellation/midbrainReticularFormation.jsonld index 0daeabfd1..690e9589d 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/midbrainReticularFormation.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/midbrainReticularFormation.jsonld @@ -4,19 +4,15 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/midbrainReticularFormation", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Midbrain reticular formation' is a nuclear complex of neuraxis and gray matter of midbrain. It is part of the midbrain tegmentum and reticular formation.", - "description": "Part of the reticular formation located in the midbrain tegmentum", + "definition": "Is a nuclear complex of neuraxis and gray matter of midbrain. Is part of the midbrain tegmentum and the reticular formation. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002639) ('is_a' and 'relationship')]", + "description": "Part of the reticular formation located in the midbrain tegmentum. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002639)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106943", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002639#midbrain-reticular-formation-1", "name": "midbrain reticular formation", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002639", "synonym": [ - "formatio reticularis mesencephali", - "formatio reticularis tegmentalis", - "formatio reticularis tegmenti mesencephali", - "MBRF", "reticular formation of midbrain", - "substantia reticularis mesencephali", "tegmental reticular formation" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/midbrainSubarachnoidSpace.jsonld b/instances/v3.0/terminologies/UBERONParcellation/midbrainSubarachnoidSpace.jsonld new file mode 100644 index 000000000..b4e87dae5 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/midbrainSubarachnoidSpace.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/midbrainSubarachnoidSpace", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a subarachnoid space. Is part of the midbrain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0005217) ('is_a' and 'relationship')]", + "description": "A subarachnoid space that is part of a midbrain. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0005217)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005217#midbrain-subarachnoid-space", + "name": "midbrain subarachnoid space", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005217", + "synonym": [ + "subarachnoid space midbrain" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/midbrainTectum.jsonld b/instances/v3.0/terminologies/UBERONParcellation/midbrainTectum.jsonld index 762cb1383..789319e91 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/midbrainTectum.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/midbrainTectum.jsonld @@ -4,20 +4,17 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/midbrainTectum", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Midbrain tectum' is a regional part of brain. It is part of the midbrain.", - "description": "Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei (MM).The dorsal topographic division of the midbrain, essentially dorsal to the cerebral aqueduct and dominated in mammals by the superior colliculi and inferior colliculi, and contrasting with the ventral topographic division, the tegmentum. Schwalbe (1881, p. 454) apparently introduced the term as currently used, \"Decke des Mittelhirns\" in the original German; also see Cajal (1899-1904, vol 2, pt 1, p. 449), \"el techo\" and \"la porci\u00c3\u00b3n tectal\" in the original Spanish. Also see Williams & Warwick (1980, p. 940), International Anatomical Nomenclature Committee (1983, p. A68), Federative Committee on Anatomical Terminology (1998, A14.1.06.601). Common synonym is corpora quadrigemina (Winslow, 1733).", + "definition": "Is a regional part of brain. Is part of the midbrain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002314) ('is_a' and 'relationship')]", + "description": "Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei (MM). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002314)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106950", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002314#midbrain-tectum", "name": "midbrain tectum", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002314", "synonym": [ - "Tec", - "tectum", - "Neuraxis tectum", "mesencephalic tectum", - "tectum mesencephali", - "tectum mesencephalicum", - "tectum of midbrain", - "t. mesencephali" + "neuraxis tectum", + "tectum", + "tectum mesencephali" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/midbrainTegmentum.jsonld b/instances/v3.0/terminologies/UBERONParcellation/midbrainTegmentum.jsonld index 293d05cd5..57a4ca5c0 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/midbrainTegmentum.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/midbrainTegmentum.jsonld @@ -4,18 +4,15 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/midbrainTegmentum", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Midbrain tegmentum' is a regional part of brain. It is part of the midbrain and brainstem.", - "description": "Subdivision of the midbrain lying anterior to the tectum and posterior to the substantia nigra and cerebral peduncle.", + "definition": "Is a regional part of brain. Is part of the midbrain and the brainstem. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001943) ('is_a' and 'relationship')]", + "description": "Ventral part of the midbrain, separated from the hindbrain by the isthmus. Subdivision of the midbrain lying anterior to the tectum and posterior to the substantia nigra and cerebral peduncle The part of the midbrain extending from the substantia nigra to the cerebral aqueduct in a horizontal section of the midbrain. It forms the floor of the midbrain that surrounds the cerebral aqueduct. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001943)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106951", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001943#midbrain-tegmentum-1", "name": "midbrain tegmentum", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001943", "synonym": [ - "mesencephalic tegmentum", - "MTg", - "tegmentum", "tegmentum mesencephali", - "tegmentum mesencephalicum", "tegmentum of midbrain" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/midbrainhindbrainBoundary.jsonld b/instances/v3.0/terminologies/UBERONParcellation/midbrainhindbrainBoundary.jsonld index c5a55825e..199dce25e 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/midbrainhindbrainBoundary.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/midbrainhindbrainBoundary.jsonld @@ -2,13 +2,19 @@ "@context": { "@vocab": "https://openminds.ebrains.eu/vocab/" }, - "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/midbrainhindbrainBoundary", + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/midbrainHindbrainBoundary", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Midbrain-hindbrain boundary' is part of the brain.", - "description": "The part of the brain that is the morphological boundary between the midbrain and hindbrain and that is the location of an organizing center which patterns the midbrain and hindbrain primordia of the neural plate.", + "definition": "Is part of the brain. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003052)]", + "description": "The part of the brain that is the morphological boundary between the midbrain and hindbrain and that is the location of an organizing center which patterns the midbrain and hindbrain primordia of the neural plate. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003052)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0728815", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003052#midbrain-hindbrain-boundary", "name": "midbrain-hindbrain boundary", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003052", - "synonym": null + "synonym": [ + "MHB", + "mid-hindbrain boundary", + "mid-hindbrain junction", + "midbrain hindbrain boundary" + ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/midlineColumn.jsonld b/instances/v3.0/terminologies/UBERONParcellation/midlineColumn.jsonld new file mode 100644 index 000000000..db7c50381 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/midlineColumn.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/midlineColumn", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is an anatomical entity. Is part of the medullary reticular formation. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000241) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2000241#midline-column", + "name": "midline column", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2000241", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/midlineNuclearGroup.jsonld b/instances/v3.0/terminologies/UBERONParcellation/midlineNuclearGroup.jsonld index 6ba22536a..406d912d8 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/midlineNuclearGroup.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/midlineNuclearGroup.jsonld @@ -4,24 +4,21 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/midlineNuclearGroup", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Midline nuclear group' is a nucleus of dorsal thalamus.", - "description": "The midline nuclear group (or midline thalamic nuclei) a region of the thalamus consisting of the following nuclei: paraventricular nucleus of thalamus (nucleus paraventricularis thalami) - not to be confused with paraventricular nucleus of hypothalamus paratenial nucleus (nucleus parataenialis) reuniens nucleus (nucleus reuniens) rhomboidal nucleus (nucleus commissuralis rhomboidalis) subfascicular nucleus (nucleus subfascicularis) [WP,unvetted].", + "definition": "Is a nucleus of dorsal thalamus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002705)]", + "description": "The midline nuclear group (or midline thalamic nuclei) a region of the thalamus consisting of the following nuclei: paraventricular nucleus of thalamus (nucleus paraventricularis thalami) - not to be confused with paraventricular nucleus of hypothalamus paratenial nucleus (nucleus parataenialis) reuniens nucleus (nucleus reuniens) rhomboidal nucleus (nucleus commissuralis rhomboidalis) subfascicular nucleus (nucleus subfascicularis). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002705)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106971", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002705#midline-nuclear-group-1", "name": "midline nuclear group", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002705", "synonym": [ "median nuclei of thalamus", - "midline group of the dorsal thalamus", "midline nuclear group", "midline nuclear group of thalamus", "midline nuclei of thalamus", "midline thalamic group", - "midline thalamic nuclear group", - "midline thalamic nuclei", "nuclei mediani (thalami)", "nuclei mediani thalami", - "nucleus mediani thalami", "periventricular nuclei of thalamus" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/mossyFiber.jsonld b/instances/v3.0/terminologies/UBERONParcellation/mossyFiber.jsonld new file mode 100644 index 000000000..2684bc6d0 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/mossyFiber.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/mossyFiber", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is part of the corpus cerebelli and the valvula cerebelli. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2002210)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2002210#mossy-fiber", + "name": "mossy fiber", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2002210", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/muscleSpindle.jsonld b/instances/v3.0/terminologies/UBERONParcellation/muscleSpindle.jsonld new file mode 100644 index 000000000..164257d9c --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/muscleSpindle.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/muscleSpindle", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is an anatomical entity. Is part of the nervous system. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003718) ('is_a' and 'relationship')]", + "description": "The sensory organs in muscle that are involved in the stretch reflex. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003718)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003718#muscle-spindle", + "name": "muscle spindle", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003718", + "synonym": [ + "neuromuscular spindle" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/myelin.jsonld b/instances/v3.0/terminologies/UBERONParcellation/myelin.jsonld new file mode 100644 index 000000000..bc363665f --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/myelin.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/myelin", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is an anatomical entity and anatomical structure. Is part of the nervous system. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000345) ('is_a' and 'relationship')]", + "description": "A dielectric (electrically insulating) material consisting of protein and fat that forms a layer, the myelin sheath, usually around only the axon of a neuron. Myelin is about 40 % water; the dry mass of myelin is about 70 - 85 % lipids and about 15 - 30 % proteins. Some of the proteins that make up myelin are myelin basic protein (MBP), myelin oligodendrocyte glycoprotein (MOG), and proteolipid protein (PLP). The primary lipid of myelin is a glycolipid called galactocerebroside (GalC). The intertwining hydrocarbon chains of sphingomyelin serve to strengthen the myelin sheath. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000345)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000345#myelin", + "name": "myelin", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000345", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/neuralDecussation.jsonld b/instances/v3.0/terminologies/UBERONParcellation/neuralDecussation.jsonld new file mode 100644 index 000000000..ca214502d --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/neuralDecussation.jsonld @@ -0,0 +1,20 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/neuralDecussation", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a neuron projection bundle and central nervous system cell part cluster. Is part of the white matter. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007418) ('is_a' and 'relationship')]", + "description": "Nerve fibers crossing the midline of the neuraxis relative to their point of origin, on a course to from one level of the nervous system to another. (CUMBO, Heimer, L. The Human Brain, 2nd ed., 1995, pg 6) [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007418)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007418#neural-decussation", + "name": "neural decussation", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007418", + "synonym": [ + "decussation of neuraxis", + "neuraxis chiasm", + "neuraxis chiasma", + "neuraxis decussation" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/neuralGlomerulus.jsonld b/instances/v3.0/terminologies/UBERONParcellation/neuralGlomerulus.jsonld new file mode 100644 index 000000000..527e4a17d --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/neuralGlomerulus.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/neuralGlomerulus", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a neuropil. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001047)]", + "description": "Large synaptic bouton found in areas like olfactory bulb, cerebellar cortex and thalamus, that contacts many post-synaptic targets. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001047)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001047#neural-glomerulus", + "name": "neural glomerulus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001047", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/neuralTissue.jsonld b/instances/v3.0/terminologies/UBERONParcellation/neuralTissue.jsonld new file mode 100644 index 000000000..9c043c53e --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/neuralTissue.jsonld @@ -0,0 +1,19 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/neuralTissue", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is an anatomical entity. Is part of the nervous system. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003714) ('is_a' and 'relationship')]", + "description": "Portion of tissue in the nervous system which consists of neurons and glial cells, and may also contain parts of the vasculature. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003714)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003714#neural-tissue", + "name": "neural tissue", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003714", + "synonym": [ + "nerve tissue", + "nervous tissue", + "portion of neural tissue" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/neuralTubeAlarPlate.jsonld b/instances/v3.0/terminologies/UBERONParcellation/neuralTubeAlarPlate.jsonld new file mode 100644 index 000000000..def13e246 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/neuralTubeAlarPlate.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/neuralTubeAlarPlate", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is an anatomical entity. Is part of the neural tube mantle layer. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0005882) ('is_a' and 'relationship')]", + "description": "The mantle layer of the neural tube that lies dorsal to the sulcus limitans and contains primarily sensory neurons and interneurons involved in communication of sensory impulses. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0005882)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005882#neural-tube-alar-plate", + "name": "neural tube alar plate", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005882", + "synonym": [ + "alar plate", + "alar plate of neural tube" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/neuralTubeBasalPlate.jsonld b/instances/v3.0/terminologies/UBERONParcellation/neuralTubeBasalPlate.jsonld new file mode 100644 index 000000000..f9ba23c86 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/neuralTubeBasalPlate.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/neuralTubeBasalPlate", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is part of the neural tube mantle layer. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004064)]", + "description": "The region of the mantle layer of the neural tube that lies ventral to the sulcus limitans and contains primarily motor neurons and interneurons. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004064)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004064#neural-tube-basal-plate", + "name": "neural tube basal plate", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004064", + "synonym": [ + "basal plate", + "basal plate of neural tube" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/neuralTubeDerivedBrain.jsonld b/instances/v3.0/terminologies/UBERONParcellation/neuralTubeDerivedBrain.jsonld new file mode 100644 index 000000000..09df165ad --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/neuralTubeDerivedBrain.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/neuralTubeDerivedBrain", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a brain. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0008823)]", + "description": "A brain that develops from a neural tube. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0008823)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0008823#neural-tube-derived-brain", + "name": "neural tube derived brain", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0008823", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/neuroendocrineGland.jsonld b/instances/v3.0/terminologies/UBERONParcellation/neuroendocrineGland.jsonld new file mode 100644 index 000000000..7a14673ec --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/neuroendocrineGland.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/neuroendocrineGland", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is an anatomical entity. Is part of the nervous system. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0010133) ('is_a' and 'relationship')]", + "description": "Any of the organized aggregations of cells that function as secretory or excretory organs and that release hormones in response to neural stimuli. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0010133)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0010133#neuroendocrine-gland", + "name": "neuroendocrine gland", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0010133", + "synonym": [ + "neuroendocrine system gland" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/neurohypophysis.jsonld b/instances/v3.0/terminologies/UBERONParcellation/neurohypophysis.jsonld index aa236111a..c87c8452d 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/neurohypophysis.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/neurohypophysis.jsonld @@ -4,11 +4,26 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/neurohypophysis", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Neurohypophysis' is a gland of diencephalon and secretory circumventricular organ. It is part of the pituitary gland.", - "description": "The posterior part of the pituitary gland that secretes hormones involved in blood pressure regulation such as oxytocin and antidiuretic hormon.", + "definition": "Is a gland of diencephalon and secretory circumventricular organ. Is part of the pituitary gland. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002198) ('is_a' and 'relationship')]", + "description": "The posterior part of the pituitary gland that secretes hormones involved in blood pressure regulation such as oxytocin and antidiuretic hormon. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002198)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107477", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002198#neurohypophysis-1", "name": "neurohypophysis", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002198", - "synonym": null + "synonym": [ + "infundibular process", + "lobus nervosus neurohypophysis", + "lobus posterior (glandula pituitaria)", + "lobus posterior hypophysis", + "neural lobe", + "neural lobe of pituitary", + "neural lobe of pituitary gland", + "neuro hypophysis", + "neurohypophysis", + "pituitary gland, posterior lobe", + "posterior lobe of pituitary", + "posterior lobe of pituitary gland", + "posterior pituitary" + ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/neuromere.jsonld b/instances/v3.0/terminologies/UBERONParcellation/neuromere.jsonld new file mode 100644 index 000000000..18fe91722 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/neuromere.jsonld @@ -0,0 +1,19 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/neuromere", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a segmental subdivision of nervous system. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004731)]", + "description": "A transverse unitary subdivision of the neural tube that shares a common dorsoventral structure (floor, basal, alar, and roof plates), but each having differential molecular identities and fates; they comprise the secondary prosencephalon, diencephalon (prosomeres), the midbrain (mesomeres), and the hindbrain (rhombomeres). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004731)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004731#neuromere", + "name": "neuromere", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004731", + "synonym": [ + "neural tube metameric segment", + "neural tube segment", + "neuromere" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/neuronProjectionBundle.jsonld b/instances/v3.0/terminologies/UBERONParcellation/neuronProjectionBundle.jsonld new file mode 100644 index 000000000..23591f8f9 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/neuronProjectionBundle.jsonld @@ -0,0 +1,19 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/neuronProjectionBundle", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is an anatomical entity. Is part of the nervous system. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000122) ('is_a' and 'relationship')]", + "description": "A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synapses. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000122)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000122#neuron-projection-bundle", + "name": "neuron projection bundle", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000122", + "synonym": [ + "funiculus", + "nerve fiber bundle", + "neural fiber bundle" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/neuronProjectionBundleConnectingEyeWithBrain.jsonld b/instances/v3.0/terminologies/UBERONParcellation/neuronProjectionBundleConnectingEyeWithBrain.jsonld new file mode 100644 index 000000000..7255e2153 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/neuronProjectionBundleConnectingEyeWithBrain.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/neuronProjectionBundleConnectingEyeWithBrain", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a neuron projection bundle. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004904)]", + "description": "A neuron projection bundle that connects the retina or its analog in the eye with the brain. This includes the vertebrate optic nerve (not truly a nerve) as well as analogous structures such as the Bolwig nerve in Drosophila. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004904)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004904#neuron-projection-bundle-connecting-eye-with-brain", + "name": "neuron projection bundle connecting eye with brain", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004904", + "synonym": [ + "optic nerve (generic)" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/neuropil.jsonld b/instances/v3.0/terminologies/UBERONParcellation/neuropil.jsonld new file mode 100644 index 000000000..b01ebfc0d --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/neuropil.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/neuropil", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a central nervous system cell part cluster. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002606)]", + "description": "A cluster of neurites that is part of a nervous system and forms a network of dendrites and axons where synapses are present and in which neuronal somata do not occur. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002606)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002606#neuropil", + "name": "neuropil", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002606", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/nidopallium.jsonld b/instances/v3.0/terminologies/UBERONParcellation/nidopallium.jsonld new file mode 100644 index 000000000..68a52bf7e --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/nidopallium.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/nidopallium", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a regional part of brain. Is part of the pallium. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007334) ('is_a' and 'relationship')]", + "description": "The nidopallium, meaning nested pallium, is the region of the avian brain that is used mostly for some types of executive functions but also other higher cognitive tasks. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007334)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007334#nidopallium", + "name": "nidopallium", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007334", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/nodosalPlacode.jsonld b/instances/v3.0/terminologies/UBERONParcellation/nodosalPlacode.jsonld new file mode 100644 index 000000000..0094ec0aa --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/nodosalPlacode.jsonld @@ -0,0 +1,19 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/nodosalPlacode", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is an epibranchial placode. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0009126)]", + "description": "Caudalmost epibranchial placode. Associated with 3rd branchial cleft. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0009126)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0009126#nodosal-placode", + "name": "nodosal placode", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0009126", + "synonym": [ + "epibranchial placode 3", + "nodose placode", + "vagal epibranchial placode" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/nuclearComplexOfNeuraxis.jsonld b/instances/v3.0/terminologies/UBERONParcellation/nuclearComplexOfNeuraxis.jsonld new file mode 100644 index 000000000..ca4ae8c19 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/nuclearComplexOfNeuraxis.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/nuclearComplexOfNeuraxis", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a gray matter. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007245)]", + "description": "Gray matter of the central nervous system which is a collection of clustered nuclei. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007245)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007245#nuclear-complex-of-neuraxis", + "name": "nuclear complex of neuraxis", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007245", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/occipitalPole.jsonld b/instances/v3.0/terminologies/UBERONParcellation/occipitalPole.jsonld new file mode 100644 index 000000000..bc8e4ff52 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/occipitalPole.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/occipitalPole", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a pole of cerebral hemisphere. Is part of the occipital lobe. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002902) ('is_a' and 'relationship')]", + "description": "The anterior end of the hemisphere is named the frontal pole. The posterior end is named the occipital pole. The anterior end of the temporal lobe, the temporal pole. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002902)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002902#occipital-pole-1", + "name": "occipital pole", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002902", + "synonym": [ + "polus occipitalis" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/occipitofrontalFasciculus.jsonld b/instances/v3.0/terminologies/UBERONParcellation/occipitofrontalFasciculus.jsonld new file mode 100644 index 000000000..b1535c277 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/occipitofrontalFasciculus.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/occipitofrontalFasciculus", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a cerebral nerve fasciculus. Is part of the white matter of telencephalon and the forebrain ipsilateral fiber tracts. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0034754) ('is_a' and 'relationship')]", + "description": "The occipitofrontal fasciculus passes backward from the frontal lobe, along the lateral border of the caudate nucleus, and on the medial aspect of the corona radiata; its fibers radiate in a fan-like manner and pass into the occipital and temporal lobes lateral to the posterior and inferior cornua. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0034754)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0034754#occipitofrontal-fasciculus", + "name": "occipitofrontal fasciculus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034754", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/oculomotorDivisionOfOculomotorNuclearComplex.jsonld b/instances/v3.0/terminologies/UBERONParcellation/oculomotorDivisionOfOculomotorNuclearComplex.jsonld new file mode 100644 index 000000000..6c4e63ab9 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/oculomotorDivisionOfOculomotorNuclearComplex.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/oculomotorDivisionOfOculomotorNuclearComplex", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a nuclear complex of neuraxis and gray matter of midbrain. Is part of the oculomotor nuclear complex. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0014523) ('is_a' and 'relationship')]", + "description": "A division of oculomotor nuclear complex that exists in organisms with electric organs which is responsible for eye movements. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0014523)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014523#oculomotor-division-of-oculomotor-nuclear-complex", + "name": "oculomotor division of oculomotor nuclear complex", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014523", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/oculomotorNuclearComplex.jsonld b/instances/v3.0/terminologies/UBERONParcellation/oculomotorNuclearComplex.jsonld index 9b2871811..bf5c2246c 100644 --- a/instances/v3.0/terminologies/UBERONParcellation/oculomotorNuclearComplex.jsonld +++ b/instances/v3.0/terminologies/UBERONParcellation/oculomotorNuclearComplex.jsonld @@ -4,26 +4,23 @@ }, "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/oculomotorNuclearComplex", "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", - "definition": "'Oculomotor nuclear complex' is a nuclear complex of neuraxis and gray matter of midbrain. It is part of the midbrain tegmentum.", - "description": "Nuclear complex containing subnuclei that give rise to the axons of the occulomotor nerve, both motor and parasympathetic fibers, situated at the midline at the level of the superior colliculus in the midbrain tegmentum (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 533-534).", + "definition": "Is a nuclear complex of neuraxis and gray matter of midbrain. Is part of the midbrain tegmentum. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001715) ('is_a' and 'relationship')]", + "description": "Nuclear complex containing subnuclei that give rise to the axons of the occulomotor nerve, both motor and parasympathetic fibers, situated at the midline at the level of the superior colliculus in the midbrain tegmentum (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 533-534). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001715)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107899", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001715#oculomotor-nuclear-complex-1", "name": "oculomotor nuclear complex", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001715", "synonym": [ - "3N", - "motor nucleus III", - "nIII", "nucleus nervi oculomotorii", - "nucleus oculomotorius", + "nucleus nervi oculomotorii", "nucleus of oculomotor nerve", "nucleus of oculomotor nuclear complex", "nucleus of third cranial nerve", "oculomotor III nuclear complex", "oculomotor III nucleus", - "oculomotor motornucleus", "oculomotor nucleus", "OM", "third cranial nerve nucleus" ] } + diff --git a/instances/v3.0/terminologies/UBERONParcellation/olivaryBody.jsonld b/instances/v3.0/terminologies/UBERONParcellation/olivaryBody.jsonld new file mode 100644 index 000000000..fb5ee698d --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/olivaryBody.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/olivaryBody", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is part of the medulla oblongata. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000128)]", + "description": "Prominent oval structure in the medulla oblongata, present in pairs, the lower portion of the brainstem. They contain the olivary nuclei. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000128)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000128#olivary-body", + "name": "olivary body", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000128", + "synonym": [ + "olive body" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/olivocochlearBundle.jsonld b/instances/v3.0/terminologies/UBERONParcellation/olivocochlearBundle.jsonld new file mode 100644 index 000000000..f5afd308c --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/olivocochlearBundle.jsonld @@ -0,0 +1,22 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/olivocochlearBundle", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a tract of brain. Is part of the pontine tegmentum. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002775) ('is_a' and 'relationship')]", + "description": "A pathway that terminates on the hair cells of the cochlea or equivalent organ in the inner ear. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002775)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002775#olivocochlear-bundle-1", + "name": "olivocochlear bundle", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002775", + "synonym": [ + "bundle of Rasmussen", + "efferent cochlear bundle", + "efferent cochlear pathway", + "olivocochlear bundle of rasmussen", + "olivocochlear tract", + "tractus olivocochlearis" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/ommatidium.jsonld b/instances/v3.0/terminologies/UBERONParcellation/ommatidium.jsonld new file mode 100644 index 000000000..8ad19aec3 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/ommatidium.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ommatidium", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is an arthropod sensillum. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000971)]", + "description": "The smallest morphological and functional unit of the compound eye that consists of a usually limited and often constant number of rhabdomeric photoreceptor cells, cornea-secreting epithelial cells, and interommatidial pigment cells, and may additionally contain crystalline cone cells. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000971)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000971#ommatidium", + "name": "ommatidium", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000971", + "synonym": [ + "omatidium" + ] +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/operculumOfBrain.jsonld b/instances/v3.0/terminologies/UBERONParcellation/operculumOfBrain.jsonld new file mode 100644 index 000000000..52a20424a --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/operculumOfBrain.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/operculumOfBrain", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a regional part of brain. Is part of the frontal lobe. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0010262) ('is_a' and 'relationship')]", + "description": "The most posterior portion of the inferior frontal gyrus of the frontal lobe in the brain. In an axial plane, the Sylvian fissure extends from the operculum posteriorly to divide the frontal from the temporal lobe. Broca's area is a notable part of the operculum, which plays a key role in conversation or speech production, reading and writing. Its vascular supply comes from the M3 branches of the middle cerebral artery. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0010262)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0010262#operculum-of-brain", + "name": "operculum of brain", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0010262", + "synonym": null +} + diff --git a/instances/v3.0/terminologies/UBERONParcellation/ophthalmicPlexus.jsonld b/instances/v3.0/terminologies/UBERONParcellation/ophthalmicPlexus.jsonld new file mode 100644 index 000000000..ab2632f35 --- /dev/null +++ b/instances/v3.0/terminologies/UBERONParcellation/ophthalmicPlexus.jsonld @@ -0,0 +1,20 @@ +{ + "@context": { + "@vocab": "https://openminds.ebrains.eu/vocab/" + }, + "@id": "https://openminds.ebrains.eu/instances/UBERONParcellation/ophthalmicPlexus", + "@type": "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation", + "definition": "Is a nerve plexus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0011194)]", + "description": "An autonomic plexus, entering the orbit in company with the ophthalmic artery, derived from the internal carotid plexus. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0011194)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0011194#ophthalmic-plexus", + "name": "ophthalmic plexus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0011194", + "synonym": [ + "ophthalmic nerve plexus", + "ophthalmic plexus", + "opthalmic plexus", + "plexus ophthalmicus" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/MeissnersCorpuscle.jsonld b/instances/v4.0/terminologies/UBERONParcellation/MeissnersCorpuscle.jsonld new file mode 100644 index 000000000..36e9af4ad --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/MeissnersCorpuscle.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/MeissnersCorpuscle", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a mechanoreceptor. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0012450)]", + "description": "A type of nerve ending in the skin that is responsible for sensitivity to light touch. In particular, they have highest sensitivity (lowest threshold) when sensing vibrations lower than 50 Hertz. They are rapidly adaptive receptors. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0012450)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0012450#meissner-s-corpuscle", + "name": "Meissner's corpuscle", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0012450", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/MeyersLoopOfOpticRadiation.jsonld b/instances/v4.0/terminologies/UBERONParcellation/MeyersLoopOfOpticRadiation.jsonld new file mode 100644 index 000000000..2bdf0c0bc --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/MeyersLoopOfOpticRadiation.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/MeyersLoopOfOpticRadiation", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a radiation of cerebral hemisphere. Is part of the optic radiation. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035935) ('is_a' and 'relationship')]", + "description": "Part of the optic radiation which sweeps back on itself into the temporal lobe, just lateral to the temporal horn of the lateral ventricle.. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035935)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035935#meyer-s-loop-of-optic-radiation", + "name": "Meyer's loop of optic radiation", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035935", + "synonym": [ + "inferior optic radiation", + "Meyer's loop" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/medullaryReticularFormation.jsonld b/instances/v4.0/terminologies/UBERONParcellation/medullaryReticularFormation.jsonld index c49f668f9..457e024b6 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/medullaryReticularFormation.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/medullaryReticularFormation.jsonld @@ -4,8 +4,8 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/medullaryReticularFormation", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Medullary reticular formation' is a nuclear complex of neuraxis and gray matter of hindbrain. It is part of the medulla oblongata and reticular formation.", - "description": "Part of reticular formation located in the medulla", + "definition": "Is a nuclear complex of neuraxis and gray matter of hindbrain. Is part of the medulla oblongata and the reticular formation. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002559) ('is_a' and 'relationship')]", + "description": "The reticular formation is a series of brain nuclei located in the medulla oblongata. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002559)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106744", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002559#medullary-reticular-formation-1", "name": "medullary reticular formation", @@ -13,12 +13,10 @@ "synonym": [ "bulb reticular formation", "bulbar reticular formation", - "formatio reticularis myelencephali", "medulla oblongata reticular formation", "medulla oblonmgata reticular formation", "medullary reticular nucleus", "metepencephalon reticular formation", - "reticular formation", "reticular formation of bulb", "reticular formation of medulla", "reticular formation of medulla oblongata", @@ -27,3 +25,4 @@ "rhombencephalic reticular formation" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/meningealCluster.jsonld b/instances/v4.0/terminologies/UBERONParcellation/meningealCluster.jsonld new file mode 100644 index 000000000..03ea736d5 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/meningealCluster.jsonld @@ -0,0 +1,19 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/meningealCluster", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an anatomical entity. Is part of the central nervous system. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0010743) ('is_a' and 'relationship')]", + "description": "The collection of all meningeal layers that line a central nervous system. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0010743)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0010743#meningeal-cluster", + "name": "meningeal cluster", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0010743", + "synonym": [ + "cerebral meninges", + "cluster of meninges", + "meninges" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/meninx.jsonld b/instances/v4.0/terminologies/UBERONParcellation/meninx.jsonld new file mode 100644 index 000000000..ea06853c4 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/meninx.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/meninx", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is part of the meningeal cluster. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002360)]", + "description": "Membrane organ that surrounds the brain and the spinal cord. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002360)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002360#meninx-1", + "name": "meninx", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002360", + "synonym": [ + "layer of meninges", + "meningeal layer" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/meninxOfHindbrain.jsonld b/instances/v4.0/terminologies/UBERONParcellation/meninxOfHindbrain.jsonld index f4e936eda..20c990524 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/meninxOfHindbrain.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/meninxOfHindbrain.jsonld @@ -4,11 +4,16 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/meninxOfHindbrain", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Meninx of hindbrain' is a brain meninx. It is part of the hindbrain.", - "description": null, + "definition": "Is a brain meninx. Is part of the hindbrain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003291) ('is_a' and 'relationship')]", + "description": "A meninx that is part of a hindbrain. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003291)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0736366", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003291#meninx-of-hindbrain", "name": "meninx of hindbrain", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003291", - "synonym": null + "synonym": [ + "hindbrain meninges", + "hindbrain meninx", + "meninges of hindbrain" + ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/meninxOfMidbrain.jsonld b/instances/v4.0/terminologies/UBERONParcellation/meninxOfMidbrain.jsonld new file mode 100644 index 000000000..0b9c1b9b2 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/meninxOfMidbrain.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/meninxOfMidbrain", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a brain meninx. Is part of the midbrain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003288) ('is_a' and 'relationship')]", + "description": "A meninx that is part of a midbrain. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003288)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003288#meninx-of-midbrain", + "name": "meninx of midbrain", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003288", + "synonym": [ + "midbrain meninx" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/mesentericPlexus.jsonld b/instances/v4.0/terminologies/UBERONParcellation/mesentericPlexus.jsonld new file mode 100644 index 000000000..18c1306e3 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/mesentericPlexus.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/mesentericPlexus", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an autonomic nerve plexus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035771)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035771#mesenteric-plexus", + "name": "mesenteric plexus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035771", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/mesomere1.jsonld b/instances/v4.0/terminologies/UBERONParcellation/mesomere1.jsonld new file mode 100644 index 000000000..d222b7028 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/mesomere1.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/mesomere1", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a midbrain neuromere. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0019272)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0019272#mesomere-1", + "name": "mesomere 1", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0019272", + "synonym": [ + "mesomere M1" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/mesomere2.jsonld b/instances/v4.0/terminologies/UBERONParcellation/mesomere2.jsonld new file mode 100644 index 000000000..b189fb7bd --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/mesomere2.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/mesomere2", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a midbrain neuromere. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0019274)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0019274#mesomere-2", + "name": "mesomere 2", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0019274", + "synonym": [ + "mesomere 2 (preisthmus or caudal midbrain)", + "mesomere M2" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/mesopallium.jsonld b/instances/v4.0/terminologies/UBERONParcellation/mesopallium.jsonld new file mode 100644 index 000000000..d6770bbd4 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/mesopallium.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/mesopallium", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a regional part of brain. Is part of the pallium. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007349) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007349#mesopallium", + "name": "mesopallium", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007349", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/metathalamus.jsonld b/instances/v4.0/terminologies/UBERONParcellation/metathalamus.jsonld index 2966782d7..d6d1ef3d6 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/metathalamus.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/metathalamus.jsonld @@ -4,19 +4,16 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/metathalamus", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Metathalamus' is a nucleus of dorsal thalamus.", - "description": "The metathalamus is a composite structure of the thalamus, consisting of the medial geniculate nucleus and the lateral geniculate nucleus. [WP,unvetted].", + "definition": "Is a nucleus of dorsal thalamus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002704)]", + "description": "The metathalamus is a composite structure of the thalamus, consisting of the medial geniculate nucleus and the lateral geniculate nucleus. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002704)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106839", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002704#metathalamus-1", "name": "metathalamus", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002704", "synonym": [ - "corpora geniculata", - "geniculate group of dorsal thalamus", "geniculate group of the dorsal thalamus", "geniculate thalamic group", - "geniculate thalamic nuclear group (metathalamus)", - "MTh", "nuclei metathalami" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/midbrain.jsonld b/instances/v4.0/terminologies/UBERONParcellation/midbrain.jsonld index b287c0071..53ff0b00c 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/midbrain.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/midbrain.jsonld @@ -4,14 +4,12 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/midbrain", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Midbrain' is a regional part of brain.", - "description": "Part of the brain that develops from the middle of the 3 primary vesicles of the embryonic neural tube, between the prosencephalon and rhombencephalon, later forming the tectum and cerebral peduncles. (CSP)", + "definition": "Is a regional part of brain. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001891)]", + "description": "The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001891)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106935", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001891#midbrain-1", "name": "midbrain", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001891", - "synonym": [ - "MB", - "Mesencephalon" - ] + "synonym": null } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/midbrainBasalPlate.jsonld b/instances/v4.0/terminologies/UBERONParcellation/midbrainBasalPlate.jsonld new file mode 100644 index 000000000..ea61f7fda --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/midbrainBasalPlate.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/midbrainBasalPlate", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a gray matter. Is part of the midbrain mantle layer. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0010285) ('is_a' and 'relationship')]", + "description": "Portion of tissue that is dorsolateral to the floor plate and part of the midbrain. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0010285)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0010285#midbrain-basal-plate", + "name": "midbrain basal plate", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0010285", + "synonym": [ + "basal plate midbrain", + "basal plate midbrain region" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/midbrainCerebralAqueduct.jsonld b/instances/v4.0/terminologies/UBERONParcellation/midbrainCerebralAqueduct.jsonld index c4f6202c3..fbdd6ccb0 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/midbrainCerebralAqueduct.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/midbrainCerebralAqueduct.jsonld @@ -4,29 +4,27 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/midbrainCerebralAqueduct", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Midbrain cerebral aqueduct' is a brain ventricle. It is part of the midbrain.", - "description": "Part of ventricular system of brain consisting of a narrow channel in the midbrain connecting the third and fourth ventricles. (Maryann Martone)", + "definition": "Is a brain ventricle. Is part of the midbrain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002289) ('is_a' and 'relationship')]", + "description": "Part of ventricular system of brain consisting of a narrow channel in the midbrain connecting the third and fourth ventricles. (Maryann Martone) [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002289)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0101977", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002289#cerebral-aqueduct", "name": "midbrain cerebral aqueduct", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002289", "synonym": [ - "aqueduct", - "Aqueduct (Sylvius)", + "aqueduct (Sylvius)", "aqueduct of midbrain", "aqueduct of Sylvius", "aqueductus mesencephali", "cerebral aquaduct", "cerebral aqueduct", - "Cerebral aqueduct of Sylvius", - "cerebral aqueduct proper", + "cerebral aqueduct of Sylvius", "medial tectal ventricle", "mesencephalic duct", "mesencephalic ventricle", - "mesencephalic vesicle", "midbrain cerebral aqueduct", "midbrain ventricle", "Sylvian aqueduct", "tectal ventricle" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/midbrainNeuromere.jsonld b/instances/v4.0/terminologies/UBERONParcellation/midbrainNeuromere.jsonld new file mode 100644 index 000000000..8a6cac446 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/midbrainNeuromere.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/midbrainNeuromere", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a neuromere. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0014776)]", + "description": "A neuromere that is part of the presumptive midbrain. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0014776)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014776#midbrain-neuromere", + "name": "midbrain neuromere", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014776", + "synonym": [ + "mesomere of nervous system", + "neuromere of mesomere group" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/midbrainReticularFormation.jsonld b/instances/v4.0/terminologies/UBERONParcellation/midbrainReticularFormation.jsonld index 017d6c754..d98ab38a0 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/midbrainReticularFormation.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/midbrainReticularFormation.jsonld @@ -4,19 +4,15 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/midbrainReticularFormation", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Midbrain reticular formation' is a nuclear complex of neuraxis and gray matter of midbrain. It is part of the midbrain tegmentum and reticular formation.", - "description": "Part of the reticular formation located in the midbrain tegmentum", + "definition": "Is a nuclear complex of neuraxis and gray matter of midbrain. Is part of the midbrain tegmentum and the reticular formation. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002639) ('is_a' and 'relationship')]", + "description": "Part of the reticular formation located in the midbrain tegmentum. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002639)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106943", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002639#midbrain-reticular-formation-1", "name": "midbrain reticular formation", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002639", "synonym": [ - "formatio reticularis mesencephali", - "formatio reticularis tegmentalis", - "formatio reticularis tegmenti mesencephali", - "MBRF", "reticular formation of midbrain", - "substantia reticularis mesencephali", "tegmental reticular formation" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/midbrainSubarachnoidSpace.jsonld b/instances/v4.0/terminologies/UBERONParcellation/midbrainSubarachnoidSpace.jsonld new file mode 100644 index 000000000..8519fee2d --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/midbrainSubarachnoidSpace.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/midbrainSubarachnoidSpace", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a subarachnoid space. Is part of the midbrain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0005217) ('is_a' and 'relationship')]", + "description": "A subarachnoid space that is part of a midbrain. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0005217)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005217#midbrain-subarachnoid-space", + "name": "midbrain subarachnoid space", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005217", + "synonym": [ + "subarachnoid space midbrain" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/midbrainTectum.jsonld b/instances/v4.0/terminologies/UBERONParcellation/midbrainTectum.jsonld index 86084163a..114b9129a 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/midbrainTectum.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/midbrainTectum.jsonld @@ -4,20 +4,17 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/midbrainTectum", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Midbrain tectum' is a regional part of brain. It is part of the midbrain.", - "description": "Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei (MM).The dorsal topographic division of the midbrain, essentially dorsal to the cerebral aqueduct and dominated in mammals by the superior colliculi and inferior colliculi, and contrasting with the ventral topographic division, the tegmentum. Schwalbe (1881, p. 454) apparently introduced the term as currently used, \"Decke des Mittelhirns\" in the original German; also see Cajal (1899-1904, vol 2, pt 1, p. 449), \"el techo\" and \"la porci\u00c3\u00b3n tectal\" in the original Spanish. Also see Williams & Warwick (1980, p. 940), International Anatomical Nomenclature Committee (1983, p. A68), Federative Committee on Anatomical Terminology (1998, A14.1.06.601). Common synonym is corpora quadrigemina (Winslow, 1733).", + "definition": "Is a regional part of brain. Is part of the midbrain. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002314) ('is_a' and 'relationship')]", + "description": "Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei (MM). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002314)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106950", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002314#midbrain-tectum", "name": "midbrain tectum", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002314", "synonym": [ - "Tec", - "tectum", - "Neuraxis tectum", "mesencephalic tectum", - "tectum mesencephali", - "tectum mesencephalicum", - "tectum of midbrain", - "t. mesencephali" + "neuraxis tectum", + "tectum", + "tectum mesencephali" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/midbrainTegmentum.jsonld b/instances/v4.0/terminologies/UBERONParcellation/midbrainTegmentum.jsonld index c015486bd..41386917b 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/midbrainTegmentum.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/midbrainTegmentum.jsonld @@ -4,18 +4,15 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/midbrainTegmentum", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Midbrain tegmentum' is a regional part of brain. It is part of the midbrain and brainstem.", - "description": "Subdivision of the midbrain lying anterior to the tectum and posterior to the substantia nigra and cerebral peduncle.", + "definition": "Is a regional part of brain. Is part of the midbrain and the brainstem. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001943) ('is_a' and 'relationship')]", + "description": "Ventral part of the midbrain, separated from the hindbrain by the isthmus. Subdivision of the midbrain lying anterior to the tectum and posterior to the substantia nigra and cerebral peduncle The part of the midbrain extending from the substantia nigra to the cerebral aqueduct in a horizontal section of the midbrain. It forms the floor of the midbrain that surrounds the cerebral aqueduct. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001943)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106951", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001943#midbrain-tegmentum-1", "name": "midbrain tegmentum", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001943", "synonym": [ - "mesencephalic tegmentum", - "MTg", - "tegmentum", "tegmentum mesencephali", - "tegmentum mesencephalicum", "tegmentum of midbrain" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/midbrainhindbrainBoundary.jsonld b/instances/v4.0/terminologies/UBERONParcellation/midbrainhindbrainBoundary.jsonld index 1774c44d5..0337c0cf8 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/midbrainhindbrainBoundary.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/midbrainhindbrainBoundary.jsonld @@ -2,13 +2,19 @@ "@context": { "@vocab": "https://openminds.om-i.org/props/" }, - "@id": "https://openminds.om-i.org/instances/UBERONParcellation/midbrainhindbrainBoundary", + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/midbrainHindbrainBoundary", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Midbrain-hindbrain boundary' is part of the brain.", - "description": "The part of the brain that is the morphological boundary between the midbrain and hindbrain and that is the location of an organizing center which patterns the midbrain and hindbrain primordia of the neural plate.", + "definition": "Is part of the brain. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003052)]", + "description": "The part of the brain that is the morphological boundary between the midbrain and hindbrain and that is the location of an organizing center which patterns the midbrain and hindbrain primordia of the neural plate. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003052)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0728815", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003052#midbrain-hindbrain-boundary", "name": "midbrain-hindbrain boundary", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003052", - "synonym": null + "synonym": [ + "MHB", + "mid-hindbrain boundary", + "mid-hindbrain junction", + "midbrain hindbrain boundary" + ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/midlineColumn.jsonld b/instances/v4.0/terminologies/UBERONParcellation/midlineColumn.jsonld new file mode 100644 index 000000000..7c7bdf0b2 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/midlineColumn.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/midlineColumn", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an anatomical entity. Is part of the medullary reticular formation. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000241) ('is_a' and 'relationship')]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2000241#midline-column", + "name": "midline column", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2000241", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/midlineNuclearGroup.jsonld b/instances/v4.0/terminologies/UBERONParcellation/midlineNuclearGroup.jsonld index 9f0350ceb..cadf9ccd7 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/midlineNuclearGroup.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/midlineNuclearGroup.jsonld @@ -4,24 +4,21 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/midlineNuclearGroup", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Midline nuclear group' is a nucleus of dorsal thalamus.", - "description": "The midline nuclear group (or midline thalamic nuclei) a region of the thalamus consisting of the following nuclei: paraventricular nucleus of thalamus (nucleus paraventricularis thalami) - not to be confused with paraventricular nucleus of hypothalamus paratenial nucleus (nucleus parataenialis) reuniens nucleus (nucleus reuniens) rhomboidal nucleus (nucleus commissuralis rhomboidalis) subfascicular nucleus (nucleus subfascicularis) [WP,unvetted].", + "definition": "Is a nucleus of dorsal thalamus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002705)]", + "description": "The midline nuclear group (or midline thalamic nuclei) a region of the thalamus consisting of the following nuclei: paraventricular nucleus of thalamus (nucleus paraventricularis thalami) - not to be confused with paraventricular nucleus of hypothalamus paratenial nucleus (nucleus parataenialis) reuniens nucleus (nucleus reuniens) rhomboidal nucleus (nucleus commissuralis rhomboidalis) subfascicular nucleus (nucleus subfascicularis). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002705)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0106971", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002705#midline-nuclear-group-1", "name": "midline nuclear group", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002705", "synonym": [ "median nuclei of thalamus", - "midline group of the dorsal thalamus", "midline nuclear group", "midline nuclear group of thalamus", "midline nuclei of thalamus", "midline thalamic group", - "midline thalamic nuclear group", - "midline thalamic nuclei", "nuclei mediani (thalami)", "nuclei mediani thalami", - "nucleus mediani thalami", "periventricular nuclei of thalamus" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/mossyFiber.jsonld b/instances/v4.0/terminologies/UBERONParcellation/mossyFiber.jsonld new file mode 100644 index 000000000..42baed6a4 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/mossyFiber.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/mossyFiber", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is part of the corpus cerebelli and the valvula cerebelli. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2002210)]", + "description": null, + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2002210#mossy-fiber", + "name": "mossy fiber", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2002210", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/muscleSpindle.jsonld b/instances/v4.0/terminologies/UBERONParcellation/muscleSpindle.jsonld new file mode 100644 index 000000000..a679b1dc8 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/muscleSpindle.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/muscleSpindle", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an anatomical entity. Is part of the nervous system. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003718) ('is_a' and 'relationship')]", + "description": "The sensory organs in muscle that are involved in the stretch reflex. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003718)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003718#muscle-spindle", + "name": "muscle spindle", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003718", + "synonym": [ + "neuromuscular spindle" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/myelin.jsonld b/instances/v4.0/terminologies/UBERONParcellation/myelin.jsonld new file mode 100644 index 000000000..a81e27664 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/myelin.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/myelin", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an anatomical entity and anatomical structure. Is part of the nervous system. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000345) ('is_a' and 'relationship')]", + "description": "A dielectric (electrically insulating) material consisting of protein and fat that forms a layer, the myelin sheath, usually around only the axon of a neuron. Myelin is about 40 % water; the dry mass of myelin is about 70 - 85 % lipids and about 15 - 30 % proteins. Some of the proteins that make up myelin are myelin basic protein (MBP), myelin oligodendrocyte glycoprotein (MOG), and proteolipid protein (PLP). The primary lipid of myelin is a glycolipid called galactocerebroside (GalC). The intertwining hydrocarbon chains of sphingomyelin serve to strengthen the myelin sheath. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000345)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000345#myelin", + "name": "myelin", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000345", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/neuralDecussation.jsonld b/instances/v4.0/terminologies/UBERONParcellation/neuralDecussation.jsonld new file mode 100644 index 000000000..cc11c7dd8 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/neuralDecussation.jsonld @@ -0,0 +1,20 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/neuralDecussation", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a neuron projection bundle and central nervous system cell part cluster. Is part of the white matter. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007418) ('is_a' and 'relationship')]", + "description": "Nerve fibers crossing the midline of the neuraxis relative to their point of origin, on a course to from one level of the nervous system to another. (CUMBO, Heimer, L. The Human Brain, 2nd ed., 1995, pg 6) [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007418)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007418#neural-decussation", + "name": "neural decussation", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007418", + "synonym": [ + "decussation of neuraxis", + "neuraxis chiasm", + "neuraxis chiasma", + "neuraxis decussation" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/neuralGlomerulus.jsonld b/instances/v4.0/terminologies/UBERONParcellation/neuralGlomerulus.jsonld new file mode 100644 index 000000000..023da40a3 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/neuralGlomerulus.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/neuralGlomerulus", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a neuropil. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001047)]", + "description": "Large synaptic bouton found in areas like olfactory bulb, cerebellar cortex and thalamus, that contacts many post-synaptic targets. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001047)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001047#neural-glomerulus", + "name": "neural glomerulus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001047", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/neuralTissue.jsonld b/instances/v4.0/terminologies/UBERONParcellation/neuralTissue.jsonld new file mode 100644 index 000000000..201dcd6cc --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/neuralTissue.jsonld @@ -0,0 +1,19 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/neuralTissue", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an anatomical entity. Is part of the nervous system. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003714) ('is_a' and 'relationship')]", + "description": "Portion of tissue in the nervous system which consists of neurons and glial cells, and may also contain parts of the vasculature. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0003714)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0003714#neural-tissue", + "name": "neural tissue", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0003714", + "synonym": [ + "nerve tissue", + "nervous tissue", + "portion of neural tissue" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/neuralTubeAlarPlate.jsonld b/instances/v4.0/terminologies/UBERONParcellation/neuralTubeAlarPlate.jsonld new file mode 100644 index 000000000..aaff5f8a7 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/neuralTubeAlarPlate.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/neuralTubeAlarPlate", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an anatomical entity. Is part of the neural tube mantle layer. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0005882) ('is_a' and 'relationship')]", + "description": "The mantle layer of the neural tube that lies dorsal to the sulcus limitans and contains primarily sensory neurons and interneurons involved in communication of sensory impulses. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0005882)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0005882#neural-tube-alar-plate", + "name": "neural tube alar plate", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0005882", + "synonym": [ + "alar plate", + "alar plate of neural tube" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/neuralTubeBasalPlate.jsonld b/instances/v4.0/terminologies/UBERONParcellation/neuralTubeBasalPlate.jsonld new file mode 100644 index 000000000..7b8f8eab1 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/neuralTubeBasalPlate.jsonld @@ -0,0 +1,18 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/neuralTubeBasalPlate", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is part of the neural tube mantle layer. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004064)]", + "description": "The region of the mantle layer of the neural tube that lies ventral to the sulcus limitans and contains primarily motor neurons and interneurons. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004064)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004064#neural-tube-basal-plate", + "name": "neural tube basal plate", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004064", + "synonym": [ + "basal plate", + "basal plate of neural tube" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/neuralTubeDerivedBrain.jsonld b/instances/v4.0/terminologies/UBERONParcellation/neuralTubeDerivedBrain.jsonld new file mode 100644 index 000000000..f5a0962aa --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/neuralTubeDerivedBrain.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/neuralTubeDerivedBrain", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a brain. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0008823)]", + "description": "A brain that develops from a neural tube. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0008823)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0008823#neural-tube-derived-brain", + "name": "neural tube derived brain", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0008823", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/neuroendocrineGland.jsonld b/instances/v4.0/terminologies/UBERONParcellation/neuroendocrineGland.jsonld new file mode 100644 index 000000000..6b6c66659 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/neuroendocrineGland.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/neuroendocrineGland", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an anatomical entity. Is part of the nervous system. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0010133) ('is_a' and 'relationship')]", + "description": "Any of the organized aggregations of cells that function as secretory or excretory organs and that release hormones in response to neural stimuli. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0010133)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0010133#neuroendocrine-gland", + "name": "neuroendocrine gland", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0010133", + "synonym": [ + "neuroendocrine system gland" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/neurohypophysis.jsonld b/instances/v4.0/terminologies/UBERONParcellation/neurohypophysis.jsonld index 73a9645e4..c7209eb20 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/neurohypophysis.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/neurohypophysis.jsonld @@ -4,11 +4,26 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/neurohypophysis", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Neurohypophysis' is a gland of diencephalon and secretory circumventricular organ. It is part of the pituitary gland.", - "description": "The posterior part of the pituitary gland that secretes hormones involved in blood pressure regulation such as oxytocin and antidiuretic hormon.", + "definition": "Is a gland of diencephalon and secretory circumventricular organ. Is part of the pituitary gland. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002198) ('is_a' and 'relationship')]", + "description": "The posterior part of the pituitary gland that secretes hormones involved in blood pressure regulation such as oxytocin and antidiuretic hormon. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002198)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107477", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002198#neurohypophysis-1", "name": "neurohypophysis", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002198", - "synonym": null + "synonym": [ + "infundibular process", + "lobus nervosus neurohypophysis", + "lobus posterior (glandula pituitaria)", + "lobus posterior hypophysis", + "neural lobe", + "neural lobe of pituitary", + "neural lobe of pituitary gland", + "neuro hypophysis", + "neurohypophysis", + "pituitary gland, posterior lobe", + "posterior lobe of pituitary", + "posterior lobe of pituitary gland", + "posterior pituitary" + ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/neuromere.jsonld b/instances/v4.0/terminologies/UBERONParcellation/neuromere.jsonld new file mode 100644 index 000000000..cc9e8c9ac --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/neuromere.jsonld @@ -0,0 +1,19 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/neuromere", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a segmental subdivision of nervous system. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004731)]", + "description": "A transverse unitary subdivision of the neural tube that shares a common dorsoventral structure (floor, basal, alar, and roof plates), but each having differential molecular identities and fates; they comprise the secondary prosencephalon, diencephalon (prosomeres), the midbrain (mesomeres), and the hindbrain (rhombomeres). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004731)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004731#neuromere", + "name": "neuromere", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004731", + "synonym": [ + "neural tube metameric segment", + "neural tube segment", + "neuromere" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/neuronProjectionBundle.jsonld b/instances/v4.0/terminologies/UBERONParcellation/neuronProjectionBundle.jsonld new file mode 100644 index 000000000..6f49e4bbe --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/neuronProjectionBundle.jsonld @@ -0,0 +1,19 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/neuronProjectionBundle", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an anatomical entity. Is part of the nervous system. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000122) ('is_a' and 'relationship')]", + "description": "A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synapses. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000122)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000122#neuron-projection-bundle", + "name": "neuron projection bundle", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000122", + "synonym": [ + "funiculus", + "nerve fiber bundle", + "neural fiber bundle" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/neuronProjectionBundleConnectingEyeWithBrain.jsonld b/instances/v4.0/terminologies/UBERONParcellation/neuronProjectionBundleConnectingEyeWithBrain.jsonld new file mode 100644 index 000000000..a23be355c --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/neuronProjectionBundleConnectingEyeWithBrain.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/neuronProjectionBundleConnectingEyeWithBrain", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a neuron projection bundle. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004904)]", + "description": "A neuron projection bundle that connects the retina or its analog in the eye with the brain. This includes the vertebrate optic nerve (not truly a nerve) as well as analogous structures such as the Bolwig nerve in Drosophila. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0004904)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0004904#neuron-projection-bundle-connecting-eye-with-brain", + "name": "neuron projection bundle connecting eye with brain", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0004904", + "synonym": [ + "optic nerve (generic)" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/neuropil.jsonld b/instances/v4.0/terminologies/UBERONParcellation/neuropil.jsonld new file mode 100644 index 000000000..f14f822a5 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/neuropil.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/neuropil", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a central nervous system cell part cluster. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002606)]", + "description": "A cluster of neurites that is part of a nervous system and forms a network of dendrites and axons where synapses are present and in which neuronal somata do not occur. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002606)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002606#neuropil", + "name": "neuropil", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002606", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/nidopallium.jsonld b/instances/v4.0/terminologies/UBERONParcellation/nidopallium.jsonld new file mode 100644 index 000000000..9fd91508d --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/nidopallium.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/nidopallium", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a regional part of brain. Is part of the pallium. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007334) ('is_a' and 'relationship')]", + "description": "The nidopallium, meaning nested pallium, is the region of the avian brain that is used mostly for some types of executive functions but also other higher cognitive tasks. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007334)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007334#nidopallium", + "name": "nidopallium", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007334", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/nodosalPlacode.jsonld b/instances/v4.0/terminologies/UBERONParcellation/nodosalPlacode.jsonld new file mode 100644 index 000000000..cf3d9a1eb --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/nodosalPlacode.jsonld @@ -0,0 +1,19 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/nodosalPlacode", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an epibranchial placode. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0009126)]", + "description": "Caudalmost epibranchial placode. Associated with 3rd branchial cleft. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0009126)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0009126#nodosal-placode", + "name": "nodosal placode", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0009126", + "synonym": [ + "epibranchial placode 3", + "nodose placode", + "vagal epibranchial placode" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/nuclearComplexOfNeuraxis.jsonld b/instances/v4.0/terminologies/UBERONParcellation/nuclearComplexOfNeuraxis.jsonld new file mode 100644 index 000000000..96fe5e8c6 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/nuclearComplexOfNeuraxis.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/nuclearComplexOfNeuraxis", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a gray matter. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007245)]", + "description": "Gray matter of the central nervous system which is a collection of clustered nuclei. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007245)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007245#nuclear-complex-of-neuraxis", + "name": "nuclear complex of neuraxis", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007245", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/occipitalPole.jsonld b/instances/v4.0/terminologies/UBERONParcellation/occipitalPole.jsonld new file mode 100644 index 000000000..e52a8fd1c --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/occipitalPole.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/occipitalPole", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a pole of cerebral hemisphere. Is part of the occipital lobe. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002902) ('is_a' and 'relationship')]", + "description": "The anterior end of the hemisphere is named the frontal pole. The posterior end is named the occipital pole. The anterior end of the temporal lobe, the temporal pole. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002902)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002902#occipital-pole-1", + "name": "occipital pole", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002902", + "synonym": [ + "polus occipitalis" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/occipitofrontalFasciculus.jsonld b/instances/v4.0/terminologies/UBERONParcellation/occipitofrontalFasciculus.jsonld new file mode 100644 index 000000000..cca6c83dc --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/occipitofrontalFasciculus.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/occipitofrontalFasciculus", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a cerebral nerve fasciculus. Is part of the white matter of telencephalon and the forebrain ipsilateral fiber tracts. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0034754) ('is_a' and 'relationship')]", + "description": "The occipitofrontal fasciculus passes backward from the frontal lobe, along the lateral border of the caudate nucleus, and on the medial aspect of the corona radiata; its fibers radiate in a fan-like manner and pass into the occipital and temporal lobes lateral to the posterior and inferior cornua. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0034754)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0034754#occipitofrontal-fasciculus", + "name": "occipitofrontal fasciculus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034754", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/oculomotorDivisionOfOculomotorNuclearComplex.jsonld b/instances/v4.0/terminologies/UBERONParcellation/oculomotorDivisionOfOculomotorNuclearComplex.jsonld new file mode 100644 index 000000000..3e7bb8a49 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/oculomotorDivisionOfOculomotorNuclearComplex.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/oculomotorDivisionOfOculomotorNuclearComplex", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a nuclear complex of neuraxis and gray matter of midbrain. Is part of the oculomotor nuclear complex. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0014523) ('is_a' and 'relationship')]", + "description": "A division of oculomotor nuclear complex that exists in organisms with electric organs which is responsible for eye movements. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0014523)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0014523#oculomotor-division-of-oculomotor-nuclear-complex", + "name": "oculomotor division of oculomotor nuclear complex", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0014523", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/oculomotorNuclearComplex.jsonld b/instances/v4.0/terminologies/UBERONParcellation/oculomotorNuclearComplex.jsonld index 4c0b73a33..1609acdd1 100644 --- a/instances/v4.0/terminologies/UBERONParcellation/oculomotorNuclearComplex.jsonld +++ b/instances/v4.0/terminologies/UBERONParcellation/oculomotorNuclearComplex.jsonld @@ -4,26 +4,23 @@ }, "@id": "https://openminds.om-i.org/instances/UBERONParcellation/oculomotorNuclearComplex", "@type": "https://openminds.om-i.org/types/UBERONParcellation", - "definition": "'Oculomotor nuclear complex' is a nuclear complex of neuraxis and gray matter of midbrain. It is part of the midbrain tegmentum.", - "description": "Nuclear complex containing subnuclei that give rise to the axons of the occulomotor nerve, both motor and parasympathetic fibers, situated at the midline at the level of the superior colliculus in the midbrain tegmentum (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 533-534).", + "definition": "Is a nuclear complex of neuraxis and gray matter of midbrain. Is part of the midbrain tegmentum. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001715) ('is_a' and 'relationship')]", + "description": "Nuclear complex containing subnuclei that give rise to the axons of the occulomotor nerve, both motor and parasympathetic fibers, situated at the midline at the level of the superior colliculus in the midbrain tegmentum (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 533-534). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001715)]", "interlexIdentifier": "http://uri.interlex.org/base/ilx_0107899", "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001715#oculomotor-nuclear-complex-1", "name": "oculomotor nuclear complex", "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001715", "synonym": [ - "3N", - "motor nucleus III", - "nIII", "nucleus nervi oculomotorii", - "nucleus oculomotorius", + "nucleus nervi oculomotorii", "nucleus of oculomotor nerve", "nucleus of oculomotor nuclear complex", "nucleus of third cranial nerve", "oculomotor III nuclear complex", "oculomotor III nucleus", - "oculomotor motornucleus", "oculomotor nucleus", "OM", "third cranial nerve nucleus" ] } + diff --git a/instances/v4.0/terminologies/UBERONParcellation/olivaryBody.jsonld b/instances/v4.0/terminologies/UBERONParcellation/olivaryBody.jsonld new file mode 100644 index 000000000..417ecdd52 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/olivaryBody.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/olivaryBody", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is part of the medulla oblongata. [auto-generated from 'relationship' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000128)]", + "description": "Prominent oval structure in the medulla oblongata, present in pairs, the lower portion of the brainstem. They contain the olivary nuclei. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000128)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000128#olivary-body", + "name": "olivary body", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000128", + "synonym": [ + "olive body" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/olivocochlearBundle.jsonld b/instances/v4.0/terminologies/UBERONParcellation/olivocochlearBundle.jsonld new file mode 100644 index 000000000..a241a3e9c --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/olivocochlearBundle.jsonld @@ -0,0 +1,22 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/olivocochlearBundle", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a tract of brain. Is part of the pontine tegmentum. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002775) ('is_a' and 'relationship')]", + "description": "A pathway that terminates on the hair cells of the cochlea or equivalent organ in the inner ear. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002775)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002775#olivocochlear-bundle-1", + "name": "olivocochlear bundle", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002775", + "synonym": [ + "bundle of Rasmussen", + "efferent cochlear bundle", + "efferent cochlear pathway", + "olivocochlear bundle of rasmussen", + "olivocochlear tract", + "tractus olivocochlearis" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/ommatidium.jsonld b/instances/v4.0/terminologies/UBERONParcellation/ommatidium.jsonld new file mode 100644 index 000000000..c04df37ea --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/ommatidium.jsonld @@ -0,0 +1,17 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/ommatidium", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is an arthropod sensillum. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000971)]", + "description": "The smallest morphological and functional unit of the compound eye that consists of a usually limited and often constant number of rhabdomeric photoreceptor cells, cornea-secreting epithelial cells, and interommatidial pigment cells, and may additionally contain crystalline cone cells. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0000971)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0000971#ommatidium", + "name": "ommatidium", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0000971", + "synonym": [ + "omatidium" + ] +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/operculumOfBrain.jsonld b/instances/v4.0/terminologies/UBERONParcellation/operculumOfBrain.jsonld new file mode 100644 index 000000000..d78e1793d --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/operculumOfBrain.jsonld @@ -0,0 +1,15 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/operculumOfBrain", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a regional part of brain. Is part of the frontal lobe. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0010262) ('is_a' and 'relationship')]", + "description": "The most posterior portion of the inferior frontal gyrus of the frontal lobe in the brain. In an axial plane, the Sylvian fissure extends from the operculum posteriorly to divide the frontal from the temporal lobe. Broca's area is a notable part of the operculum, which plays a key role in conversation or speech production, reading and writing. Its vascular supply comes from the M3 branches of the middle cerebral artery. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0010262)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0010262#operculum-of-brain", + "name": "operculum of brain", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0010262", + "synonym": null +} + diff --git a/instances/v4.0/terminologies/UBERONParcellation/ophthalmicPlexus.jsonld b/instances/v4.0/terminologies/UBERONParcellation/ophthalmicPlexus.jsonld new file mode 100644 index 000000000..acb7b0b54 --- /dev/null +++ b/instances/v4.0/terminologies/UBERONParcellation/ophthalmicPlexus.jsonld @@ -0,0 +1,20 @@ +{ + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/UBERONParcellation/ophthalmicPlexus", + "@type": "https://openminds.om-i.org/types/UBERONParcellation", + "definition": "Is a nerve plexus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0011194)]", + "description": "An autonomic plexus, entering the orbit in company with the ophthalmic artery, derived from the internal carotid plexus. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0011194)]", + "interlexIdentifier": null, + "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0011194#ophthalmic-plexus", + "name": "ophthalmic plexus", + "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0011194", + "synonym": [ + "ophthalmic nerve plexus", + "ophthalmic plexus", + "opthalmic plexus", + "plexus ophthalmicus" + ] +} +