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robot reason --annotate-inferred-axioms true annotates with string #975

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shawntanzk opened this issue Mar 11, 2022 · 5 comments
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@shawntanzk
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when using robot reason --annotate-inferred-axioms true, we end up with this axiom oboInOwl:is_inferred "true"^^xsd:string
Should it be ^^xsd:boolean instead?

@jamesaoverton
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What does the OBO in OWL specification say it should be?

@matentzn
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[Term]
id: TMP:0000072
name: A
is_a: TMP:0000073 {is_inferred="true"} ! B

and

[Term]
id: TMP:0000072
name: A
is_a: TMP:0000073 {is_inferred=true} ! B

Both convert to:

SubClassOf(Annotation(<http://www.geneontology.org/formats/oboInOwl#is_inferred> "true"^^xsd:string) <http://purl.obolibrary.org/obo/TMP_0000072> <http://purl.obolibrary.org/obo/TMP_0000073>)

@matentzn
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(I guess you all heard the sigh :)

@balhoff
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balhoff commented Mar 11, 2022

If forgot this mapped to an OBO feature.

@matentzn
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matentzn commented Aug 5, 2023

Closing this in favour of owlcollab/oboformat#142

@matentzn matentzn closed this as completed Aug 5, 2023
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4 participants