Search for implementation of wf features

[olivroy]

• fs::dir_tree() as html https://fs.r-lib.org/articles/function-comparisons.html#directory-functions
• pak::pkg_deps_tree as html https://pak.r-lib.org/reference/get-started.html#dependency-tree-of-a-cran-bioconductor-package
• Function / outline mapping in RStudio https://stackoverflow.com/questions/76263524/programatically-extract-outline-of-knitr-rmd, https://github.com/stla/findInFiles
• Access GitHub source file!
• Search in files GH (possibly with gh)

In rprojroot TODO.md has the following instructions similar to usethis upkeep

Steps for adopting older packages to new development standards

docs branch

• Create from last released tag
• Copy .github/workflows/pkgdown.yaml there
• Fix URL in DESCRIPTION, don't forget trailing slash
• Tweak _pkgdown.yml
• Set source of GitHub Pages to branch

Separate pull requests

• Use GitHub Actions

• Disable tic

• Disable Travis CI and AppVeyor

• usethis::use_coverage()

• Consider open pull requests

• Tweak README

  • use downlit::readme_document and load_all() if possible

• Update roxygen2

• Use @examplesIf where appropriate

• styler::style_pkg()

• Remove Collate:

• usethis::use_lifecycle_badge()

• usethis::use_lifecycle()

• Add pkgdown reference index

• Adapt tests to testthat 3e

• Ensure that dependency between source files is cycle-free, as in Caller-callee relationship for .R files in a package yonicd/foreman#2

• Ensure that source files correspond to test files via devtools::test_coverage_file()

• Import rlang where appropriate

• Close open issues

• Deprecate functions that have moved somewhere else

• Avoid iris

• Synchronize with own downstream packages

• Add type to documentation of function arguments, as in ?here::here

• Check goodpractice::gp()

• Switch pkgdown to dev mode "auto"