NAMESPACE

# Generated by roxygen2: do not edit by hand

export(FaFile_Circ)
export(RiboseQC_analysis)
export(calc_cutoffs_from_profiles)
export(choose_readlengths)
export(create_html_report)
export(create_pdfs_from_rds_objects)
export(generate_rdata_list)
export(get_codon_usage_data)
export(get_default_rl_selection)
export(get_metagene_data)
export(get_ps_fromsplicemin)
export(get_ps_fromspliceplus)
export(get_rl_and_cutoffs)
export(get_top50_all_genes)
export(get_top50_cds_genes)
export(get_top50_mapping)
export(load_annotation)
export(plot_codon_usage_bulk)
export(plot_codon_usage_bulk_rmd)
export(plot_codon_usage_positional)
export(plot_codon_usage_positional_rmd)
export(plot_frame_dist_boxplot)
export(plot_frame_dist_boxplot_rmd)
export(plot_metagene_bar)
export(plot_metagene_bar_rmd)
export(plot_metagene_hm)
export(plot_metagene_hm_rmd)
export(plot_read_biotype_dist_1)
export(plot_read_biotype_dist_2)
export(plot_read_biotype_dist_by_length)
export(plot_read_length_dist)
export(plot_read_length_dist_by_biotype)
export(prepare_annotation_files)
exportClasses(FaFile_Circ)
exportMethods(getSeq)
exportMethods(seqinfo)
import(BSgenome)
import(BiocGenerics)
import(Biostrings)
import(DT)
import(GenomicAlignments)
import(GenomicFeatures)
import(GenomicFiles)
import(GenomicRanges)
import(Rsamtools)
import(rmarkdown)
import(gridExtra)
import(ggpubr)
import(devtools)
import(reshape2)
import(ggplot2)
import(knitr)
import(rtracklayer)
import(viridis)
importFrom(Rsamtools,FaFile)