DESCRIPTION

Package: RiboseQC
Title: RiboseQC, a Comprehensive Ribo-Seq Analysis Tool
Version: 0.99.0
Author: "Lorenzo Calviello", "Dominique Sydow", "Dermot Harnett"
Authors@R: c(person("Lorenzo", "Calviello", email = "calviello.l.bio@gmail.com", role = c("aut")),
    person("Dominique", "Sydow", email = "dominique.sydow@posteo.de", role = c("aut")),
    person("Dermott", "Harnett", email = "Dermot.Harnett@mdc-berlin.de", role = c("ctb","cre")),
    person("Uwe", "Ohler", email = "Uwe.Ohler@mdc-berlin.de", role = c("rev","fnd")))
Maintainer: Dermot Harnett <dermot.harnett@mdc-berlin.de>
Description: A powerful analysis tool for the analysis of Ribo-seq data, which is able to provide read-length specific analysis of both cytoplasmic and organellar ribosome, and provides interactive visualization of results in a dynamic html report
Imports: GenomicRanges,Rsamtools,rtracklayer, methods
biocViews: RiboSeq, Sequencing, QualityControl, DataImport, GenomeAnnotation, Transcriptomics, Software, Coverage, RNASeq
Depends: Rsamtools,rmarkdown, rtracklayer, GenomicAlignments, BSgenome, GenomicFiles, devtools, reshape2, ggplot2, knitr, DT, gridExtra, ggpubr, viridis, Biostrings, GenomicFeatures, BiocGenerics, jsonlite, methods
License: GPL-3 or above
Encoding: UTF-8
LazyData: FALSE
RoxygenNote: 6.1.1
VignetteBuilder: knitr
Suggests: 
    testthat
Collate: 
    'FaFile_Circ.R'
    'riboseqc.R'
    'riboseq_analysis.R'