diff --git a/.gitignore b/.gitignore
index 8444f897..fda9569a 100644
--- a/.gitignore
+++ b/.gitignore
@@ -148,7 +148,6 @@ src/curation/s3/
 src/curation/s3/hp/abnormalDegenerationOfAnatomicalEntity.tsv
 src/curation/tmp/
 src/curation/upheno-fillers-no-id/
-src/curation/upheno-fillers/
 src/curation/upheno-profiles/
 src/curation/upheno-release-prepare/
 src/curation/upheno-release/
diff --git a/poetry.lock b/poetry.lock
index aa5cb434..1919f2c8 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -155,13 +155,13 @@ files = [
 
 [[package]]
 name = "click"
-version = "8.1.3"
+version = "8.1.7"
 description = "Composable command line interface toolkit"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "click-8.1.3-py3-none-any.whl", hash = "sha256:bb4d8133cb15a609f44e8213d9b391b0809795062913b383c62be0ee95b1db48"},
-    {file = "click-8.1.3.tar.gz", hash = "sha256:7682dc8afb30297001674575ea00d1814d808d6a36af415a82bd481d37ba7b8e"},
+    {file = "click-8.1.7-py3-none-any.whl", hash = "sha256:ae74fb96c20a0277a1d615f1e4d73c8414f5a98db8b799a7931d1582f3390c28"},
+    {file = "click-8.1.7.tar.gz", hash = "sha256:ca9853ad459e787e2192211578cc907e7594e294c7ccc834310722b41b9ca6de"},
 ]
 
 [package.dependencies]
@@ -178,6 +178,61 @@ files = [
     {file = "colorama-0.4.6.tar.gz", hash = "sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44"},
 ]
 
+[[package]]
+name = "curies"
+version = "0.7.9"
+description = "Idiomatic conversion between URIs and compact URIs (CURIEs)."
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "curies-0.7.9-py3-none-any.whl", hash = "sha256:e4c5beb91642376953c94db0ee2fb5d2b011c3b16749516436114ba61442f260"},
+    {file = "curies-0.7.9.tar.gz", hash = "sha256:3b63c5fea7b0e967629a3a384b1a8c59b56c503487c1dcbacddeab59e25db4d8"},
+]
+
+[package.dependencies]
+pydantic = "*"
+pytrie = "*"
+requests = "*"
+
+[package.extras]
+docs = ["sphinx", "sphinx-automodapi", "sphinx-rtd-theme"]
+fastapi = ["defusedxml", "fastapi", "httpx", "python-multipart", "uvicorn"]
+flask = ["defusedxml", "flask"]
+pandas = ["pandas"]
+rdflib = ["rdflib"]
+tests = ["coverage", "pytest"]
+
+[[package]]
+name = "deprecated"
+version = "1.2.14"
+description = "Python @deprecated decorator to deprecate old python classes, functions or methods."
+optional = false
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+files = [
+    {file = "Deprecated-1.2.14-py2.py3-none-any.whl", hash = "sha256:6fac8b097794a90302bdbb17b9b815e732d3c4720583ff1b198499d78470466c"},
+    {file = "Deprecated-1.2.14.tar.gz", hash = "sha256:e5323eb936458dccc2582dc6f9c322c852a775a27065ff2b0c4970b9d53d01b3"},
+]
+
+[package.dependencies]
+wrapt = ">=1.10,<2"
+
+[package.extras]
+dev = ["PyTest", "PyTest-Cov", "bump2version (<1)", "sphinx (<2)", "tox"]
+
+[[package]]
+name = "deprecation"
+version = "2.1.0"
+description = "A library to handle automated deprecations"
+optional = false
+python-versions = "*"
+files = [
+    {file = "deprecation-2.1.0-py2.py3-none-any.whl", hash = "sha256:a10811591210e1fb0e768a8c25517cabeabcba6f0bf96564f8ff45189f90b14a"},
+    {file = "deprecation-2.1.0.tar.gz", hash = "sha256:72b3bde64e5d778694b0cf68178aed03d15e15477116add3fb773e581f9518ff"},
+]
+
+[package.dependencies]
+packaging = "*"
+
 [[package]]
 name = "distlib"
 version = "0.3.6"
@@ -246,6 +301,88 @@ pygments = ">=2.7"
 sphinx = ">=5.0,<7.0"
 sphinx-basic-ng = "*"
 
+[[package]]
+name = "greenlet"
+version = "3.0.3"
+description = "Lightweight in-process concurrent programming"
+optional = false
+python-versions = ">=3.7"
+files = [
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+    {file = "greenlet-3.0.3-cp39-cp39-win_amd64.whl", hash = "sha256:c5ee858cfe08f34712f548c3c363e807e7186f03ad7a5039ebadb29e8c6be067"},
+    {file = "greenlet-3.0.3.tar.gz", hash = "sha256:43374442353259554ce33599da8b692d5aa96f8976d567d4badf263371fbe491"},
+]
+
+[package.extras]
+docs = ["Sphinx", "furo"]
+test = ["objgraph", "psutil"]
+
+[[package]]
+name = "hbreader"
+version = "0.9.1"
+description = "Honey Badger reader - a generic file/url/string open and read tool"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "hbreader-0.9.1-py3-none-any.whl", hash = "sha256:9a6e76c9d1afc1b977374a5dc430a1ebb0ea0488205546d4678d6e31cc5f6801"},
+    {file = "hbreader-0.9.1.tar.gz", hash = "sha256:d2c132f8ba6276d794c66224c3297cec25c8079d0a4cf019c061611e0a3b94fa"},
+]
+
 [[package]]
 name = "idna"
 version = "3.4"
@@ -287,6 +424,24 @@ docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker
 perf = ["ipython"]
 testing = ["flake8 (<5)", "flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)"]
 
+[[package]]
+name = "importlib-resources"
+version = "6.4.0"
+description = "Read resources from Python packages"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "importlib_resources-6.4.0-py3-none-any.whl", hash = "sha256:50d10f043df931902d4194ea07ec57960f66a80449ff867bfe782b4c486ba78c"},
+    {file = "importlib_resources-6.4.0.tar.gz", hash = "sha256:cdb2b453b8046ca4e3798eb1d84f3cce1446a0e8e7b5ef4efb600f19fc398145"},
+]
+
+[package.dependencies]
+zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""}
+
+[package.extras]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"]
+testing = ["jaraco.test (>=5.4)", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy", "pytest-ruff (>=0.2.1)", "zipp (>=3.17)"]
+
 [[package]]
 name = "iniconfig"
 version = "2.0.0"
@@ -298,6 +453,20 @@ files = [
     {file = "iniconfig-2.0.0.tar.gz", hash = "sha256:2d91e135bf72d31a410b17c16da610a82cb55f6b0477d1a902134b24a455b8b3"},
 ]
 
+[[package]]
+name = "isodate"
+version = "0.6.1"
+description = "An ISO 8601 date/time/duration parser and formatter"
+optional = false
+python-versions = "*"
+files = [
+    {file = "isodate-0.6.1-py2.py3-none-any.whl", hash = "sha256:0751eece944162659049d35f4f549ed815792b38793f07cf73381c1c87cbed96"},
+    {file = "isodate-0.6.1.tar.gz", hash = "sha256:48c5881de7e8b0a0d648cb024c8062dc84e7b840ed81e864c7614fd3c127bde9"},
+]
+
+[package.dependencies]
+six = "*"
+
 [[package]]
 name = "jinja2"
 version = "3.1.2"
@@ -315,6 +484,96 @@ MarkupSafe = ">=2.0"
 [package.extras]
 i18n = ["Babel (>=2.7)"]
 
+[[package]]
+name = "json-flattener"
+version = "0.1.9"
+description = "Python library for denormalizing nested dicts or json objects to tables and back"
+optional = false
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+
+[[package]]
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+description = "The JSON Schema meta-schemas and vocabularies, exposed as a Registry"
+optional = false
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+
+[[package]]
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+version = "1.7.7"
+description = "Runtime environment for LinkML, the Linked open data modeling language"
+optional = false
+python-versions = "<4.0,>=3.8"
+files = [
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+pydantic = ">=1.10.2,<3.0.0"
+pyyaml = "*"
+rdflib = ">=6.0.0"
+requests = "*"
+
 [[package]]
 name = "markdown-it-py"
 version = "2.2.0"
@@ -454,6 +713,24 @@ linkify = ["linkify-it-py (>=1.0,<2.0)"]
 rtd = ["ipython", "sphinx-book-theme", "sphinx-design", "sphinxcontrib.mermaid (>=0.7.1,<0.8.0)", "sphinxext-opengraph (>=0.6.3,<0.7.0)", "sphinxext-rediraffe (>=0.2.7,<0.3.0)"]
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+[[package]]
+name = "networkx"
+version = "3.2.1"
+description = "Python package for creating and manipulating graphs and networks"
+optional = false
+python-versions = ">=3.9"
+files = [
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+[package.extras]
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+developer = ["changelist (==0.4)", "mypy (>=1.1)", "pre-commit (>=3.2)", "rtoml"]
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+test = ["pytest (>=7.2)", "pytest-cov (>=4.0)"]
+
 [[package]]
 name = "numpy"
 version = "2.0.0"
@@ -592,6 +869,22 @@ sql-other = ["SQLAlchemy (>=2.0.0)", "adbc-driver-postgresql (>=0.8.0)", "adbc-d
 test = ["hypothesis (>=6.46.1)", "pytest (>=7.3.2)", "pytest-xdist (>=2.2.0)"]
 xml = ["lxml (>=4.9.2)"]
 
+[[package]]
+name = "pansql"
+version = "0.0.1"
+description = "sqldf for pandas"
+optional = false
+python-versions = "*"
+files = [
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+]
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+[package.dependencies]
+numpy = "*"
+pandas = "*"
+sqlalchemy = "*"
+
 [[package]]
 name = "platformdirs"
 version = "3.1.1"
@@ -622,6 +915,38 @@ files = [
 dev = ["pre-commit", "tox"]
 testing = ["pytest", "pytest-benchmark"]
 
+[[package]]
+name = "prefixcommons"
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+description = "A python API for working with ID prefixes"
+optional = false
+python-versions = ">=3.7,<4.0"
+files = [
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+PyYAML = ">=6.0,<7.0"
+requests = ">=2.28.1,<3.0.0"
+
+[[package]]
+name = "prefixmaps"
+version = "0.2.4"
+description = "A python library for retrieving semantic prefix maps"
+optional = false
+python-versions = "<4.0,>=3.8"
+files = [
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+[package.dependencies]
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+pyyaml = ">=5.3.1"
+
 [[package]]
 name = "py"
 version = "1.11.0"
@@ -633,6 +958,65 @@ files = [
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+python-versions = ">=3.7"
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+[package.extras]
+dotenv = ["python-dotenv (>=0.10.4)"]
+email = ["email-validator (>=1.0.3)"]
+
 [[package]]
 name = "pygments"
 version = "2.14.0"
@@ -647,6 +1031,20 @@ files = [
 [package.extras]
 plugins = ["importlib-metadata"]
 
+[[package]]
+name = "pyparsing"
+version = "3.1.2"
+description = "pyparsing module - Classes and methods to define and execute parsing grammars"
+optional = false
+python-versions = ">=3.6.8"
+files = [
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+    {file = "pyparsing-3.1.2.tar.gz", hash = "sha256:a1bac0ce561155ecc3ed78ca94d3c9378656ad4c94c1270de543f621420f94ad"},
+]
+
+[package.extras]
+diagrams = ["jinja2", "railroad-diagrams"]
+
 [[package]]
 name = "pytest"
 version = "7.2.2"
@@ -670,6 +1068,19 @@ tomli = {version = ">=1.0.0", markers = "python_version < \"3.11\""}
 [package.extras]
 testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "xmlschema"]
 
+[[package]]
+name = "pytest-logging"
+version = "2015.11.4"
+description = "Configures logging and allows tweaking the log level with a py.test flag"
+optional = false
+python-versions = "*"
+files = [
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+]
+
+[package.dependencies]
+pytest = ">=2.8.1"
+
 [[package]]
 name = "python-dateutil"
 version = "2.9.0.post0"
@@ -684,6 +1095,19 @@ files = [
 [package.dependencies]
 six = ">=1.5"
 
+[[package]]
+name = "pytrie"
+version = "0.4.0"
+description = "A pure Python implementation of the trie data structure."
+optional = false
+python-versions = "*"
+files = [
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+
+[package.dependencies]
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+
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 test = ["Sphinx", "pytest", "sqlalchemy", "whoosh"]
 
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+    {file = "wrapt-1.16.0.tar.gz", hash = "sha256:5f370f952971e7d17c7d1ead40e49f32345a7f7a5373571ef44d800d06b1899d"},
+]
+
 [[package]]
 name = "zipp"
 version = "3.15.0"
@@ -1158,4 +2028,4 @@ docs = ["myst-parser", "sphinx", "sphinx-autodoc-typehints", "sphinx-click", "sp
 [metadata]
 lock-version = "2.0"
 python-versions = "^3.9"
-content-hash = "e585262e4d20fc03e8778cdfbcb5e61100eae8e7c50b4106226b90074b31fea2"
+content-hash = "abdfc6f7a0fa897b650907ed0b075cd8a7aa1c9c842b9f83df896cba393d9834"
diff --git a/pyproject.toml b/pyproject.toml
index 3210eb75..ab52db1e 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -18,6 +18,7 @@ sphinx-autodoc-typehints = {version = "^1.19.4", extras = ["docs"]}
 sphinx-click = {version = "^4.3.0", extras = ["docs"]}
 myst-parser = {version = "^0.18.1", extras = ["docs"]}
 pandas = "^2.2.2"
+sssom = "^0.4.9"
 
 [tool.poetry.dev-dependencies]
 pytest = "^7.1.2"