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Pattern directory

This is a listing of all the patterns hosted as part of this directory

Patterns in

Cell bearer of quality

A cell that has a specific quality, such as binucleate.

Attribute Info
IRI http://purl.obolibrary.org/obo/cl/cellBearerOfQuality
Name cellBearerOfQuality
Classes CL:0000000, PATO:0000001,
Variables cell (CL:0000000), quality (PATO:0000001),
Contributors 0000-0001-5208-3432, 0000-0002-6601-2165,
Examples mondo

Data preview:

defined:class defined:class:label cell cell:label quality quality:label
CL:0001061 abnormal cell CL:0000000 cell PATO:0000460 abnormal
CL:0000225 anucleate cell CL:0000003 native cell PATO:0001405 anucleate
CL:0000227 binucleate cell CL:0000003 native cell PATO:0001406 binucleate
CL:0000103 bipolar neuron CL:0000099 interneuron PATO:0070006 bipolar morphology
CL:4023077 bitufted neuron CL:0000099 interneuron PATO:0070012 bitufted cell morphology

See full table here

Cell capable of biological process

Any cell that is involved in/capable of a particular biological process, such as acid secretion.

Attribute Info
IRI http://purl.obolibrary.org/obo/cl/cellCapableOfBiologicalProcess
Name cellCapableOfBiologicalProcess
Classes CL:0000000, GO:0008150,
Variables cell (CL:0000000), biological_process (GO:0008150),
Contributors
Examples mondo

Data preview:

defined:class defined:class:label biological:process biological:process:label cell cell:label
CL:0000236 B cell GO:0019724 B cell mediated immunity CL:0000945 lymphocyte of B lineage
CL:0000492 CD4-positive helper T cell GO:0001816 cytokine production CL:0000624 CD4-positive, alpha-beta T cell
CL:0000795 CD8-positive, alpha-beta regulatory T cell GO:0050777 negative regulation of immune response CL:0000625 CD8-positive, alpha-beta T cell
CL:0011005 GABAergic interneuron GO:0061534 gamma-aminobutyric acid secretion, neurotransmission CL:0000099 interneuron
CL:0000617 GABAergic neuron GO:0061534 gamma-aminobutyric acid secretion, neurotransmission CL:0000540 neuron

See full table here

Cell has plasma membrane part x

A cell type that is characterized by a plasma membrane part, such as a cilium or receptor. Note - that this is only good for cells defined by a single plasma membrane receptor.

Attribute Info
IRI http://purl.obolibrary.org/obo/cl/cellHasPlasmaMembranePartX
Name cellHasPlasmaMembranePartX
Classes CL:0000000, CL:0000003, GO:0005886,
Variables cell (CL:0000003), plasma_membrane (GO:0005886),
Contributors 0000-0001-5208-3432, 0000-0002-6601-2165,
Examples

Cell part of anatomical entity

A cell that is part of an anatomical entity.

Attribute Info
IRI http://purl.obolibrary.org/obo/cl/cellPartOfAnatomicalEntity
Name cellPartOfAnatomicalEntity
Classes CL:0000000, UBERON:0001062,
Variables cell (CL:0000000), anatomical_entity (UBERON:0001062),
Contributors 0000-0001-5208-3432, 0000-0002-6601-2165,
Examples mondo

Data preview:

defined:class defined:class:label anatomical:entity anatomical:entity:label cell cell:label
CL:0009032 B cell of appendix UBERON:0001154 vermiform appendix CL:0000236 B cell
CL:0009045 B cell of medullary sinus of lymph node UBERON:0009744 lymph node medullary sinus CL:0000236 B cell
CL:0010007 His-Purkinje system cell UBERON:0004146 His-Purkinje system CL:0000003 native cell
CL:0002680 PP cell of intestine UBERON:0000160 intestine CL:0000696 PP cell
CL:0009015 Peyer's patch follicular dendritic cell UBERON:0001211 Peyer's patch CL:0000442 follicular dendritic cell

See full table here

Taxon specific

A cell that is restricted to a specific taxon, such as CL:0001200 'lymphocyte of B lineage, CD19-positive' are only in mammals. Note - this is not to be used for any cell that is restricted to a taxon, this is for taxon-specific subclasses of existing cell types. This should hardly ever be used.

Attribute Info
IRI http://purl.obolibrary.org/obo/cl/taxonSpecific
Name taxonSpecific
Classes CL:0000000, NCBITaxon:1,
Variables cell (CL:0000000), taxon (NCBITaxon:1),
Contributors 0000-0001-5208-3432, 0000-0002-6601-2165,
Examples