README.org

RAUKF applied to SINGLE OLM Model

Thsi repository contains the code used in [CITATION] in order to produce the RAUKF results.

:warning: Prior to running either of the python files provided you must ensure that the requirements.txt is used to install python modules, as well that the respective NEURON .mod files are compiled prior to usage. Steps to do so are provided below:

pip install virtualenv
virtualenv venv
source venv/bin/activate
pip install -r requirements.txt
cd ./multicompartment
nrnivmodl
cd ..
cd ./comp_opt_essential
nrnivmodl
cd ..

After doing so you can run the code residing within main.py and Plot_Comparison.py.

Project Organization

File/Folder	Description
OLM.py	Python implementation of SINGLE model
Plot_Comparison.py	Plots comparison of step current responses
README.org	Project description
comp_opt_essential	SINGLE model implementation
flake.nix	Nix flake development shell definition
img	Output directory for generated figures
main.py	Runs RAUKF state estimation for both SINGLE and FULL
multicompartment	FULL model implementation
requirements.txt	Pyhton requirements