From 67775b813b19912914dae54024b37637eb9845a8 Mon Sep 17 00:00:00 2001 From: scarlet Date: Tue, 27 Jul 2021 18:16:40 +0200 Subject: [PATCH] add docker file readme --- dockerfile/README.md | 1 + 1 file changed, 1 insertion(+) diff --git a/dockerfile/README.md b/dockerfile/README.md index efcc461..87702b5 100644 --- a/dockerfile/README.md +++ b/dockerfile/README.md @@ -3,5 +3,6 @@ docker run -it -d --rm --name epivar2 -v "$PWD/xiao_data/":/project/ epi12 pytho ## use singularity and qsub on cluster singularity pull docker://huanleliu/epi12 + singularity exec -e /full/path/to/epi12_latest.sif python3 /usr/local/bin/EpiNano/Epinano_Variants.py -R /path/to/ref.fa -b /path/to/reads.bam -s /usr/bin/EpiNano/misc/sam2tsv.jar -n 2