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Support for TransformMap #46

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oesteban opened this issue Oct 31, 2019 · 0 comments · Fixed by #59
Closed

Support for TransformMap #46

oesteban opened this issue Oct 31, 2019 · 0 comments · Fixed by #59

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@oesteban
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This would be a list of Affines, for instance, to correct for head motion. In this case, the TransformMap.map(x) method (with N transforms in the map) will generate N mappings of x.

The difference with concatenation is that transforms are not sequential in the map, they are applied in parallel.
oesteban added a commit to oesteban/nitransforms that referenced this issue Feb 18, 2020
@oesteban
ENH: Support for transforms mappings (e.g., head-motion correction)
98625bc 
Implements two types of transforms mappings:

1. a general one for any internal transform, and
2. an optimized mapping for lineart transforms (head-motion correction).

Since scipy's interpn only accepts linear and nearest interpolations,
these mappings will not support for simultaneous slice-timing correction
(STC) for the time being.

The addition of 4D tensor B-Spline basis for interpolation would allow
for simultaneous STC, HMC and SDC of functional time-series.
Not sure we should keep supporting Lanczos interpolation, very much less
if we want to do all three corrections at the same time.

Closes nipy#46
@oesteban oesteban mentioned this issue Feb 18, 2020
Merged
oesteban added a commit to oesteban/nitransforms that referenced this issue Feb 18, 2020
@oesteban
ENH: Support for transforms mappings (e.g., head-motion correction)
50447c2 
Implements two types of transforms mappings:

1. a general one for any internal transform, and
2. an optimized mapping for lineart transforms (head-motion correction).

Since scipy's interpn only accepts linear and nearest interpolations,
these mappings will not support for simultaneous slice-timing correction
(STC) for the time being.

The addition of 4D tensor B-Spline basis for interpolation would allow
for simultaneous STC, HMC and SDC of functional time-series.
Not sure we should keep supporting Lanczos interpolation, very much less
if we want to do all three corrections at the same time.

Closes nipy#46
oesteban added a commit to oesteban/nitransforms that referenced this issue Feb 19, 2020
@oesteban
ENH: Support for transforms mappings (e.g., head-motion correction)
6d58a03 
Implements two types of transforms mappings:

1. a general one for any internal transform, and
2. an optimized mapping for lineart transforms (head-motion correction).

Since scipy's interpn only accepts linear and nearest interpolations,
these mappings will not support for simultaneous slice-timing correction
(STC) for the time being.

The addition of 4D tensor B-Spline basis for interpolation would allow
for simultaneous STC, HMC and SDC of functional time-series.
Not sure we should keep supporting Lanczos interpolation, very much less
if we want to do all three corrections at the same time.

Closes nipy#46
oesteban added a commit to oesteban/nitransforms that referenced this issue Feb 19, 2020
@oesteban
ENH: Support for transforms mappings (e.g., head-motion correction)
b93a28e 
Implements two types of transforms mappings:

1. a general one for any internal transform, and
2. an optimized mapping for lineart transforms (head-motion correction).

Since scipy's interpn only accepts linear and nearest interpolations,
these mappings will not support for simultaneous slice-timing correction
(STC) for the time being.

The addition of 4D tensor B-Spline basis for interpolation would allow
for simultaneous STC, HMC and SDC of functional time-series.
Not sure we should keep supporting Lanczos interpolation, very much less
if we want to do all three corrections at the same time.

Closes nipy#46
oesteban added a commit to oesteban/nitransforms that referenced this issue Feb 19, 2020
@oesteban
ENH: Support for transforms mappings (e.g., head-motion correction)
4cfb0a8 
Implements two types of transforms mappings:

1. a general one for any internal transform, and
2. an optimized mapping for lineart transforms (head-motion correction).

Since scipy's interpn only accepts linear and nearest interpolations,
these mappings will not support for simultaneous slice-timing correction
(STC) for the time being.

The addition of 4D tensor B-Spline basis for interpolation would allow
for simultaneous STC, HMC and SDC of functional time-series.
Not sure we should keep supporting Lanczos interpolation, very much less
if we want to do all three corrections at the same time.

Closes nipy#46
oesteban added a commit to oesteban/nitransforms that referenced this issue Feb 20, 2020
@oesteban
ENH: Support for transforms mappings (e.g., head-motion correction)
d35f658 
Implements two types of transforms mappings:

1. a general one for any internal transform, and
2. an optimized mapping for lineart transforms (head-motion correction).

Since scipy's interpn only accepts linear and nearest interpolations,
these mappings will not support for simultaneous slice-timing correction
(STC) for the time being.

The addition of 4D tensor B-Spline basis for interpolation would allow
for simultaneous STC, HMC and SDC of functional time-series.
Not sure we should keep supporting Lanczos interpolation, very much less
if we want to do all three corrections at the same time.

Closes nipy#46
@oesteban oesteban mentioned this issue Aug 1, 2020
Closed
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ENH: Support for transforms mappings (e.g., head-motion correction) oesteban/nitransforms
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@oesteban