maint: do not install neurodebian on CircleCI

nipy · Feb 15, 2022 · b66cfbd · b66cfbd
1 parent 4e24225
commit b66cfbd
Showing 1 changed file with 53 additions and 62 deletions.
diff --git a/.circleci/config.yml b/.circleci/config.yml
@@ -9,6 +9,59 @@ jobs:
       FS_LICENSE: "/tmp/fslicense/license.txt"
 
     steps:
+      - restore_cache:
+          keys:
+            - env-v3-{{ .Branch }}-
+            - env-v3-master-
+            - env-v3-
+      - run:
+          name: Setup git-annex
+          command: |
+              sudo apt update && sudo apt-get install apt-transport-https ca-certificates -y && sudo update-ca-certificates
+              if [[ ! -d /opt/circleci/git-annex.linux ]]; then
+                cd /tmp
+                wget https://downloads.kitenet.net/git-annex/linux/current/git-annex-standalone-amd64.tar.gz
+                tar xzf git-annex-standalone-amd64.tar.gz -C /opt/circleci/
+              fi
+              git config --global user.name 'NiPy'
+              git config --global user.email '[email protected]'
+      - run:
+          name: Setup DataLad
+          command: |
+              export PY3=$(pyenv versions | grep '3\.' |
+                           sed -e 's/.* 3\./3./' -e 's/ .*//')
+              pyenv local $PY3
+              python -m pip install --no-cache-dir -U pip "setuptools >= 45.0" "setuptools_scm[toml] >= 3.4"
+              python -m pip install --no-cache-dir -U datalad datalad-osf
+
+      - save_cache:
+          key: env-v3-{{ .Branch }}-{{ .BuildNum }}
+          paths:
+            - /opt/circleci/git-annex.linux
+            - /opt/circleci/.pyenv/versions/3.9.4
+
+      - restore_cache:
+          keys:
+            - data-v2-{{ .Branch }}-
+            - data-v2-master-
+            - data-v2-
+      - run:
+          name: Install test data from GIN
+          command: |
+              export PY3=$(pyenv versions | grep '3\.' |
+                           sed -e 's/.* 3\./3./' -e 's/ .*//')
+              pyenv local $PY3
+              export PATH=/opt/circleci/git-annex.linux:$PATH
+              mkdir -p /tmp/data
+              cd /tmp/data
+              datalad install -r https://gin.g-node.org/oesteban/nitransforms-tests.git
+              datalad update -r --merge -d nitransforms-tests/
+              datalad get -r -d nitransforms-tests/
+      - save_cache:
+          key: data-v2-{{ .Branch }}-{{ .BuildNum }}
+          paths:
+            - /tmp/data
+
       - restore_cache:
           keys:
             - build-v1-{{ .Branch }}-{{ epoch }}
@@ -41,13 +94,6 @@ jobs:
                   docker push localhost:5000/ubuntu
               fi
       - checkout
-      - run:
-          name: Prepare a Python environment
-          command: |
-              export PY3=$(pyenv versions | grep '3\.' |
-                           sed -e 's/.* 3\./3./' -e 's/ .*//')
-              pyenv local $PY3
-              python3 -m pip install "setuptools >= 45.0" "setuptools_scm[toml] >= 3.4" "pip>=10.0.1"
       - run:
           name: Build Docker image & push to registry
           no_output_timeout: 60m
@@ -93,61 +139,6 @@ jobs:
               mkdir -p /tmp/fslicense
               cd /tmp/fslicense
               echo "cHJpbnRmICJrcnp5c3p0b2YuZ29yZ29sZXdza2lAZ21haWwuY29tXG41MTcyXG4gKkN2dW12RVYzelRmZ1xuRlM1Si8yYzFhZ2c0RVxuIiA+IGxpY2Vuc2UudHh0Cg==" | base64 -d | sh
-
-      - restore_cache:
-          keys:
-            - env-v1-{{ .Branch }}-
-            - env-v1-master-
-            - env-v1-
-      - restore_cache:
-          keys:
-            - data-v2-{{ .Branch }}-
-            - data-v2-master-
-            - data-v2-
-      - run:
-          name: Setup git-annex
-          command: |
-              if [[ ! -d /usr/lib/git-annex.linux ]]; then
-                wget -O- http://neuro.debian.net/lists/focal.us-ca.full | tee /etc/apt/sources.list.d/neurodebian.sources.list
-                apt-key add /tmp/src/nitransforms/docker/files/neurodebian.gpg
-                apt-key adv --recv-keys --keyserver hkps://keys.openpgp.org 0xA5D32F012649A5A9 || true
-                apt update && apt-get install -y --no-install-recommends git-annex-standalone
-              fi
-              git config --global user.name 'NiPy'
-              git config --global user.email '[email protected]'
-      - run:
-          name: Setup DataLad & TemplateFlow
-          command: |
-              export PY3=$(pyenv versions | grep '3\.' |
-                           sed -e 's/.* 3\./3./' -e 's/ .*//')
-              pyenv local $PY3
-              python -m pip install --no-cache-dir -U pip
-              python -m pip install --no-cache-dir -U datalad datalad-osf
-
-      - save_cache:
-          key: env-v1-{{ .Branch }}-{{ .BuildNum }}
-          paths:
-            - /usr/local/bin
-            - /usr/local/lib/python3.7/site-packages
-            - /usr/bin/git-annex
-            - /usr/bin/git-annex-shell
-            - /usr/lib/git-annex.linux
-
-      - run:
-          name: Install test data from GIN
-          command: |
-              export PY3=$(pyenv versions | grep '3\.' |
-                           sed -e 's/.* 3\./3./' -e 's/ .*//')
-              pyenv local $PY3
-
-              cd /tmp/data
-              datalad install -r https://gin.g-node.org/oesteban/nitransforms-tests
-              datalad update -r --merge -d nitransforms-tests/
-              datalad get -r -d nitransforms-tests/
-      - save_cache:
-          key: data-v1-{{ .Branch }}-{{ .BuildNum }}
-          paths:
-            - /tmp/data
       - run:
           name: Get codecov
           command: python -m pip install codecov