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INFO: Need to process 0 study sessions #719

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zinnc opened this issue Nov 25, 2023 · 0 comments
Open
1 of 2 tasks

INFO: Need to process 0 study sessions #719

zinnc opened this issue Nov 25, 2023 · 0 comments

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@zinnc
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zinnc commented Nov 25, 2023

Hi,

Recently, I am learning HeuDiConv. But I encountering a problem while running this command:
docker run --rm -it -v /home/ccb/zinn/BIDS:/base nipy/heudiconv:latest -d /base/Dicom/sub-{subject}/ses-{session}/*/*.dcm -o /base/Nifti/ -f convertall -s 105 -ss 001 -c none --overwrite

I received the message:
INFO: Running heudiconv version 1.0.0 latest 1.0.0
INFO: Need to process 0 study sessions

The path of data is /home/ccb/zinn/BIDS/Dicom and my data file is organized thusly:

  • /BIDS
       /Dicom
           /sub-105
                /ses-001
                      /anat
                      /func
                /ses-002
                /ses-003
           /sub-106
           /sub-107
       /Nifti
    

I have shared my folders /home within the docker shared folders settings.

And I also used the following command to check the path.
docker run --rm -it -v /home/ccb/zinn/BIDS:/base --entrypoint=bash nipy/heudiconv:latest
It showed:
(base) root@41ef3845a384:/# ls -lh /base/Dicom/sub-105/ses-001
total 16K
drwxrwxrwx 2 root root 4.0K Nov 25 2023 anat
drwxrwxrwx 2 root root 12K Nov 25 2023 func

Is it my Dicom files are not being found? How can I solve this problem?

Thanks a lot for any info.

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  • Local environment: Ubuntu 20.04.5 LTS

  • Container

  • Heudiconv version:
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