From 4349aafd8b5c99f2699554fd34509a893234bdd4 Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Fri, 18 Aug 2023 12:25:00 -0400 Subject: [PATCH 1/3] DOC: Use latest sphinx to fix bad sphinx/furo interaction --- docs/requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/requirements.txt b/docs/requirements.txt index 21fce8acce..f6f52b2209 100644 --- a/docs/requirements.txt +++ b/docs/requirements.txt @@ -10,6 +10,6 @@ numpy packaging pydot >= 1.2.3 pydotplus -sphinx +sphinx >= 7.2.2 sphinxcontrib-apidoc templateflow From 1acc1c794f351df5520cf9157057e8726326984b Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Fri, 18 Aug 2023 12:28:52 -0400 Subject: [PATCH 2/3] CI: Use common Python for building docs --- .circleci/config.yml | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/.circleci/config.yml b/.circleci/config.yml index 8b5f457286..b71c253344 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -123,7 +123,7 @@ jobs: datalad install -r https://gin.g-node.org/nipreps-data/brain-extraction-tests datalad update --merge -d brain-extraction-tests/ datalad get -r -J 2 -d brain-extraction-tests - + - run: name: Install HCPh fieldmaps command: | @@ -356,8 +356,7 @@ jobs: flags: unittests build_docs: - docker: - - image: python:3.8.5 + <<: *python_defaults working_directory: /tmp/gh-pages environment: - FSLOUTPUTTYPE: NIFTI From a434f184abcc94c3df2fbc9eaf79b1837a929c91 Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Fri, 18 Aug 2023 12:33:51 -0400 Subject: [PATCH 3/3] CI: Use sudo to run apt --- .circleci/config.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.circleci/config.yml b/.circleci/config.yml index b71c253344..d23179c850 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -369,8 +369,8 @@ jobs: - run: name: Install Graphviz command: | - apt-get update -y - apt-get install -y --no-install-recommends graphviz + sudo apt-get update -y + sudo apt-get install -y --no-install-recommends graphviz - run: name: Install deps command: |