From 73f61e6254b30bac617d6c8493ae48d5dcab54da Mon Sep 17 00:00:00 2001 From: Oscar Esteban Date: Tue, 30 Jul 2024 12:33:53 +0200 Subject: [PATCH] enh: use outsourced `apply()` from nitransforms --- mriqc/workflows/functional/base.py | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/mriqc/workflows/functional/base.py b/mriqc/workflows/functional/base.py index ec26cda9..2dc14189 100644 --- a/mriqc/workflows/functional/base.py +++ b/mriqc/workflows/functional/base.py @@ -819,10 +819,14 @@ def _apply_transforms(in_file, in_xfm): from pathlib import Path from nitransforms.linear import load + from nitransforms.resampling import apply from mriqc.utils.bids import derive_bids_fname - realigned = load(in_xfm, fmt='afni', reference=in_file, moving=in_file).apply(in_file) + realigned = apply( + load(in_xfm, fmt='afni', reference=in_file, moving=in_file), + in_file, + ) out_file = derive_bids_fname( in_file, entity='desc-realigned',