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Formalize enums currently used for programmatic annotations -- Mutect2, etc. #337

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anngvu opened this issue Aug 30, 2023 · 0 comments
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Formalize enums currently used for programmatic annotations -- Mutect2, etc. #337

anngvu opened this issue Aug 30, 2023 · 0 comments
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anngvu commented Aug 30, 2023 •
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Bc we annotate programmatically rather than through DCA, lots of enumerated values are being used that hasn't been formalized in model, such as Mutect2, Strelka2, etc. ( e.g. the list for "@id": "bts:SomaticVariantsWorkflowType" in HTAN model), and also file formats and data types, e.g. dataIndex etc. for the huge diversity auxiliary files.
@anngvu anngvu self-assigned this Aug 30, 2023
@anngvu anngvu moved this to Todo in NF-OSI Sprints Sep 3, 2023
@anngvu anngvu changed the title Formalize enums for currently used annotations and pipelines -- Mutect2, etc. Formalize enums for currently used for programmatic annotations -- Mutect2, etc. Sep 20, 2023
@anngvu anngvu changed the title Formalize enums for currently used for programmatic annotations -- Mutect2, etc. Formalize enums currently used for programmatic annotations -- Mutect2, etc. Sep 20, 2023
@anngvu anngvu mentioned this issue Oct 12, 2023
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@anngvu anngvu moved this from Todo to Done in NF-OSI Sprints Oct 19, 2023
@anngvu anngvu closed this as completed Oct 19, 2023
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