Changed Cutadapt to use nf-core modules #1347
Set up job
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Check out pipeline code
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Set up Nextflow
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Set up Apptainer
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Set up Singularity
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Set up Miniconda
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Set up Conda
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Clean up Disk space
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Download GTF for additional annotation
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Download medaka model
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Run pipeline with test data 24.04.2 | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --freyja_depthcutoff 1 | docker
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Post Check out pipeline code
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Complete job
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