Haplotypecaller exit status 402

[janejajajuana]

Hi! I am new in NF-Sarek Pipeline. I have been trying to run this for multiple times but I always get the same error.
The pipeline crashes in haplotypecaller step:

I also tried -resume option but it still crashes. I also increase time and memory but still failed.

[FriederikeHanssen]

The exitcode 140 typically means it runs longer than the specified time. AS you can see in the screenshot the execution is retried with more time. If you want to avoid the retries you could bump the wall time from the start for that process: https://nf-co.re/docs/usage/getting_started/configuration#tuning-workflow-resources

[janejajajuana]

Hi!

Thank you, yes actually I set the time for 4.days because when I run the pipeline by default but then I get an exitcode : 1 or 134 instead.

[FriederikeHanssen]

This output doesn't show the error messages. Can you please send the .nextflow.log file instead?

[janejajajuana]

I am running a new job right now since I didn't save a copy/screenshot from my previous runs the .nextflow.log file.

But these are the my screenshots that I saved from my previous runs:

All of these have max_time = 1.d in the config file.

[janejajajuana]

Here is my config and shell script: