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Add lofreq call-parallel (tumor-only) and lofreq somatic as variant callers #1588

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nevinwu opened this issue Jul 11, 2024 · 0 comments
Open

Add lofreq call-parallel (tumor-only) and lofreq somatic as variant callers #1588

nevinwu opened this issue Jul 11, 2024 · 0 comments
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@nevinwu @AitorPeseta
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enhancement New feature or request

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@nevinwu
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nevinwu commented Jul 11, 2024

Description of feature

Hi all, this issue is just to let you know that @AitorPeseta and I are gonna try to add lofreq as a variant caller to Sarek. We will try to add the tumor only version (lofreq call-parallel) and the somatic/paired sample version (lofreq somatic).

Our idea is to work on different branches on his fork and then make only one PR, if that's okay.
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@nevinwu @AitorPeseta