From 425fb914dd4a9e0863bcf2a386f5ede54d910a60 Mon Sep 17 00:00:00 2001 From: Friederike Hanssen Date: Tue, 30 Jul 2024 09:34:54 +0200 Subject: [PATCH] Update workflows/sarek/main.nf --- workflows/sarek/main.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/workflows/sarek/main.nf b/workflows/sarek/main.nf index d975360702..90307f19c2 100644 --- a/workflows/sarek/main.nf +++ b/workflows/sarek/main.nf @@ -152,7 +152,7 @@ workflow SAREK { if (params.step == 'mapping') { - // Figure out if input is bam or fastq + // Figure out if input is bam, fastq, or spring input_sample_type = input_sample.branch{ bam: it[0].data_type == "bam" fastq_gz: it[0].data_type == "fastq_gz"