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Fix issues with R modules changing sample names #1380
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This PR is against the
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Addresses #1377. Basically R will mangle names with symbols when constructing data frames and the like, unless you explicitly tell it not too, which I am doing here. This was neglected when we factored out and tidied up these modules in the last release.
PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).nextflow run . -profile debug,test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).