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Delete lib directory and replace with utils_* subworkflows #1197

Merged
merged 9 commits into from
Jan 22, 2024
Merged

Delete lib directory and replace with utils_* subworkflows #1197

merged 9 commits into from
Jan 22, 2024

Commits on Jan 20, 2024

  1. Move main workflow into it's own directory

    @drpatelh
    drpatelh committed Jan 20, 2024
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  2. Remove nfcore_external_java_deps.jar

    @drpatelh
    drpatelh committed Jan 20, 2024
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  3. Install utils subworkflows from nf-core modules

    @drpatelh
    drpatelh committed Jan 20, 2024
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  4. Delete lib directory and replace with utils_* subworkflows

    @drpatelh
    drpatelh committed Jan 20, 2024
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  5. Fix linting

    @drpatelh
    drpatelh committed Jan 20, 2024
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  6. Add prepare_tool_indices logic to rnaseq workflow

    @drpatelh
    drpatelh committed Jan 20, 2024
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Commits on Jan 21, 2024

  1. Move rrna-db-defaults.txt to workflow assets

    @drpatelh
    drpatelh committed Jan 21, 2024
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  2. Replace local MultiQC module with one from nf-core/modules

    @drpatelh
    drpatelh committed Jan 21, 2024
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  3. Remove test_cache profile

    @drpatelh
    drpatelh committed Jan 21, 2024
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