diff --git a/CHANGELOG.md b/CHANGELOG.md
index 8de447e70..669cd30f2 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -3,6 +3,18 @@
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
+## dev
+
+### Credits
+
+### Enhancements & fixes
+
+- [PR #1398](https://github.com/nf-core/rnaseq/pull/1398) - Bump pipeline version to 3.17.0dev
+
+### Parameters
+
+### Software dependencies
+
## [[3.16.0](https://github.com/nf-core/rnaseq/releases/tag/3.16.0)] - 2024-10-02
### Credits
@@ -37,7 +49,9 @@ Special thanks to the following for their contributions to the release:
| | `--bracken_precision` |
> **NB:** Parameter has been **updated** if both old and new parameter information is present.
+>
> **NB:** Parameter has been **added** if just the new parameter information is present.
+>
> **NB:** Parameter has been **removed** if new parameter information isn't present.
### Software dependencies
diff --git a/nextflow.config b/nextflow.config
index d2b1f40a9..fe4d8d28f 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -345,7 +345,7 @@ manifest {
description = """RNA sequencing analysis pipeline for gene/isoform quantification and extensive quality control."""
mainScript = 'main.nf'
nextflowVersion = '!>=23.04.0'
- version = '3.16.0'
+ version = '3.17.0dev'
doi = 'https://doi.org/10.5281/zenodo.1400710'
}
diff --git a/tests/default.nf.test.snap b/tests/default.nf.test.snap
index 296b93241..5bddc1cff 100644
--- a/tests/default.nf.test.snap
+++ b/tests/default.nf.test.snap
@@ -43,7 +43,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0"
+ "nf-core/rnaseq": "v3.17.0dev"
}
},
[
@@ -227,7 +227,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0"
+ "nf-core/rnaseq": "v3.17.0dev"
}
},
[
diff --git a/tests/featurecounts_group_type.nf.test.snap b/tests/featurecounts_group_type.nf.test.snap
index ee17ab23d..d1f6cfb9c 100644
--- a/tests/featurecounts_group_type.nf.test.snap
+++ b/tests/featurecounts_group_type.nf.test.snap
@@ -43,7 +43,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0"
+ "nf-core/rnaseq": "v3.17.0dev"
}
},
[
@@ -221,7 +221,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0"
+ "nf-core/rnaseq": "v3.17.0dev"
}
},
[
diff --git a/tests/hisat2.nf.test.snap b/tests/hisat2.nf.test.snap
index 4de59e1ae..8899222be 100644
--- a/tests/hisat2.nf.test.snap
+++ b/tests/hisat2.nf.test.snap
@@ -44,7 +44,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0"
+ "nf-core/rnaseq": "v3.17.0dev"
}
},
[
@@ -224,7 +224,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0"
+ "nf-core/rnaseq": "v3.17.0dev"
}
},
[
diff --git a/tests/kallisto.nf.test.snap b/tests/kallisto.nf.test.snap
index 764adab68..4bb2324e3 100644
--- a/tests/kallisto.nf.test.snap
+++ b/tests/kallisto.nf.test.snap
@@ -56,7 +56,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0"
+ "nf-core/rnaseq": "v3.17.0dev"
}
},
[
@@ -305,7 +305,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0"
+ "nf-core/rnaseq": "v3.17.0dev"
}
},
[
diff --git a/tests/min_mapped_reads.nf.test.snap b/tests/min_mapped_reads.nf.test.snap
index 1533ec60d..ce656d979 100644
--- a/tests/min_mapped_reads.nf.test.snap
+++ b/tests/min_mapped_reads.nf.test.snap
@@ -134,7 +134,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0"
+ "nf-core/rnaseq": "v3.17.0dev"
}
},
[
@@ -1321,7 +1321,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0"
+ "nf-core/rnaseq": "v3.17.0dev"
}
},
[
diff --git a/tests/remove_ribo_rna.nf.test.snap b/tests/remove_ribo_rna.nf.test.snap
index 6097461ef..da224c5e5 100644
--- a/tests/remove_ribo_rna.nf.test.snap
+++ b/tests/remove_ribo_rna.nf.test.snap
@@ -140,7 +140,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0"
+ "nf-core/rnaseq": "v3.17.0dev"
}
},
[
@@ -1571,7 +1571,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0"
+ "nf-core/rnaseq": "v3.17.0dev"
}
},
[
diff --git a/tests/salmon.nf.test.snap b/tests/salmon.nf.test.snap
index c528c6180..0adf4ff4d 100644
--- a/tests/salmon.nf.test.snap
+++ b/tests/salmon.nf.test.snap
@@ -50,7 +50,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0"
+ "nf-core/rnaseq": "v3.17.0dev"
}
},
[
@@ -378,7 +378,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0"
+ "nf-core/rnaseq": "v3.17.0dev"
}
},
[
diff --git a/tests/skip_qc.nf.test.snap b/tests/skip_qc.nf.test.snap
index ffb89c42c..3d2688737 100644
--- a/tests/skip_qc.nf.test.snap
+++ b/tests/skip_qc.nf.test.snap
@@ -40,7 +40,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0"
+ "nf-core/rnaseq": "v3.17.0dev"
}
},
[
@@ -169,7 +169,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0"
+ "nf-core/rnaseq": "v3.17.0dev"
}
},
[
diff --git a/tests/skip_trimming.nf.test.snap b/tests/skip_trimming.nf.test.snap
index 775d007ea..715c0604b 100644
--- a/tests/skip_trimming.nf.test.snap
+++ b/tests/skip_trimming.nf.test.snap
@@ -130,7 +130,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0"
+ "nf-core/rnaseq": "v3.17.0dev"
}
},
[
diff --git a/tests/star_rsem.nf.test.snap b/tests/star_rsem.nf.test.snap
index ebf025d71..51411c86c 100644
--- a/tests/star_rsem.nf.test.snap
+++ b/tests/star_rsem.nf.test.snap
@@ -134,7 +134,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0"
+ "nf-core/rnaseq": "v3.17.0dev"
}
},
[
@@ -1450,7 +1450,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.16.0"
+ "nf-core/rnaseq": "v3.17.0dev"
}
},
[
diff --git a/workflows/rnaseq/assets/multiqc/multiqc_config.yml b/workflows/rnaseq/assets/multiqc/multiqc_config.yml
index dd8bc621c..9b8ee731a 100644
--- a/workflows/rnaseq/assets/multiqc/multiqc_config.yml
+++ b/workflows/rnaseq/assets/multiqc/multiqc_config.yml
@@ -1,5 +1,5 @@
report_comment: >
- This report has been generated by the nf-core/rnaseq analysis pipeline. For information about how to interpret these results, please see the documentation.
+ This report has been generated by the nf-core/rnaseq analysis pipeline. For information about how to interpret these results, please see the documentation.
report_section_order:
# Important checks and failures
sample-status: