Merge pull request #1398 from maxulysse/3.17.0dev

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nf-core · Oct 8, 2024 · 224655a · 224655a
2 parents 00a0857 + 3d00806
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -3,6 +3,18 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## dev
+
+### Credits
+
+### Enhancements & fixes
+
+- [PR #1398](https://github.com/nf-core/rnaseq/pull/1398) - Bump pipeline version to 3.17.0dev
+
+### Parameters
+
+### Software dependencies
+
 ## [[3.16.0](https://github.com/nf-core/rnaseq/releases/tag/3.16.0)] - 2024-10-02
 
 ### Credits
@@ -37,7 +49,9 @@ Special thanks to the following for their contributions to the release:
 |               | `--bracken_precision`       |
 
 > **NB:** Parameter has been **updated** if both old and new parameter information is present.
+>
 > **NB:** Parameter has been **added** if just the new parameter information is present.
+>
 > **NB:** Parameter has been **removed** if new parameter information isn't present.
 
 ### Software dependencies

diff --git a/nextflow.config b/nextflow.config
@@ -345,7 +345,7 @@ manifest {
     description     = """RNA sequencing analysis pipeline for gene/isoform quantification and extensive quality control."""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=23.04.0'
-    version         = '3.16.0'
+    version         = '3.17.0dev'
     doi             = 'https://doi.org/10.5281/zenodo.1400710'
 }
 

diff --git a/tests/default.nf.test.snap b/tests/default.nf.test.snap
@@ -43,7 +43,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.16.0"
+                    "nf-core/rnaseq": "v3.17.0dev"
                 }
             },
             [
@@ -227,7 +227,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.16.0"
+                    "nf-core/rnaseq": "v3.17.0dev"
                 }
             },
             [

diff --git a/tests/featurecounts_group_type.nf.test.snap b/tests/featurecounts_group_type.nf.test.snap
@@ -43,7 +43,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.16.0"
+                    "nf-core/rnaseq": "v3.17.0dev"
                 }
             },
             [
@@ -221,7 +221,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.16.0"
+                    "nf-core/rnaseq": "v3.17.0dev"
                 }
             },
             [

diff --git a/tests/hisat2.nf.test.snap b/tests/hisat2.nf.test.snap
@@ -44,7 +44,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.16.0"
+                    "nf-core/rnaseq": "v3.17.0dev"
                 }
             },
             [
@@ -224,7 +224,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.16.0"
+                    "nf-core/rnaseq": "v3.17.0dev"
                 }
             },
             [

diff --git a/tests/kallisto.nf.test.snap b/tests/kallisto.nf.test.snap
@@ -56,7 +56,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.16.0"
+                    "nf-core/rnaseq": "v3.17.0dev"
                 }
             },
             [
@@ -305,7 +305,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.16.0"
+                    "nf-core/rnaseq": "v3.17.0dev"
                 }
             },
             [

diff --git a/tests/min_mapped_reads.nf.test.snap b/tests/min_mapped_reads.nf.test.snap
@@ -134,7 +134,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.16.0"
+                    "nf-core/rnaseq": "v3.17.0dev"
                 }
             },
             [
@@ -1321,7 +1321,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.16.0"
+                    "nf-core/rnaseq": "v3.17.0dev"
                 }
             },
             [

diff --git a/tests/remove_ribo_rna.nf.test.snap b/tests/remove_ribo_rna.nf.test.snap
@@ -140,7 +140,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.16.0"
+                    "nf-core/rnaseq": "v3.17.0dev"
                 }
             },
             [
@@ -1571,7 +1571,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.16.0"
+                    "nf-core/rnaseq": "v3.17.0dev"
                 }
             },
             [

diff --git a/tests/salmon.nf.test.snap b/tests/salmon.nf.test.snap
@@ -50,7 +50,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.16.0"
+                    "nf-core/rnaseq": "v3.17.0dev"
                 }
             },
             [
@@ -378,7 +378,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.16.0"
+                    "nf-core/rnaseq": "v3.17.0dev"
                 }
             },
             [

diff --git a/tests/skip_qc.nf.test.snap b/tests/skip_qc.nf.test.snap
@@ -40,7 +40,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.16.0"
+                    "nf-core/rnaseq": "v3.17.0dev"
                 }
             },
             [
@@ -169,7 +169,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.16.0"
+                    "nf-core/rnaseq": "v3.17.0dev"
                 }
             },
             [

diff --git a/tests/skip_trimming.nf.test.snap b/tests/skip_trimming.nf.test.snap
@@ -130,7 +130,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.16.0"
+                    "nf-core/rnaseq": "v3.17.0dev"
                 }
             },
             [

diff --git a/tests/star_rsem.nf.test.snap b/tests/star_rsem.nf.test.snap
@@ -134,7 +134,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.16.0"
+                    "nf-core/rnaseq": "v3.17.0dev"
                 }
             },
             [
@@ -1450,7 +1450,7 @@
                     "untar": 1.34
                 },
                 "Workflow": {
-                    "nf-core/rnaseq": "v3.16.0"
+                    "nf-core/rnaseq": "v3.17.0dev"
                 }
             },
             [

diff --git a/workflows/rnaseq/assets/multiqc/multiqc_config.yml b/workflows/rnaseq/assets/multiqc/multiqc_config.yml
@@ -1,5 +1,5 @@
 report_comment: >
-  This report has been generated by the <a href="https://github.com/nf-core/rnaseq/releases/tag/3.16.0" target="_blank">nf-core/rnaseq</a> analysis pipeline. For information about how to interpret these results, please see the <a href="https://nf-co.re/rnaseq/3.16.0/docs/output" target="_blank">documentation</a>.
+  This report has been generated by the <a href="https://github.com/nf-core/rnaseq/tree/dev" target="_blank">nf-core/rnaseq</a> analysis pipeline. For information about how to interpret these results, please see the <a href="https://nf-co.re/rnaseq/dev/docs/output" target="_blank">documentation</a>.
 report_section_order:
   # Important checks and failures
   sample-status: