diff --git a/docs/usage.md b/docs/usage.md index 09b991d3..9eb3c8bb 100644 --- a/docs/usage.md +++ b/docs/usage.md @@ -68,7 +68,7 @@ If you specify the `--alphafold2_db ` parameter, the directory structure of your ``` ├── mgnify -│   └── mgy_clusters_2018_12.fa +│   └── mgy_clusters_2022_05.fa ├── alphafold_params_2022-03-02 │   ├── LICENSE │   ├── params_model_1_multimer.npz diff --git a/modules/local/run_alphafold2.nf b/modules/local/run_alphafold2.nf index 86d728d7..13136369 100644 --- a/modules/local/run_alphafold2.nf +++ b/modules/local/run_alphafold2.nf @@ -57,7 +57,7 @@ process RUN_ALPHAFOLD2 { --output_dir=\$PWD \ --data_dir=\$PWD \ --uniref90_database_path=./uniref90/uniref90.fasta \ - --mgnify_database_path=./mgnify/mgy_clusters_2018_12.fa \ + --mgnify_database_path=./mgnify/mgy_clusters_2022_05.fa \ --template_mmcif_dir=./pdb_mmcif/mmcif_files \ --obsolete_pdbs_path=./pdb_mmcif/obsolete.dat \ --random_seed=53343 \ diff --git a/modules/local/run_alphafold2_msa.nf b/modules/local/run_alphafold2_msa.nf index 401a6aa5..e983ed92 100644 --- a/modules/local/run_alphafold2_msa.nf +++ b/modules/local/run_alphafold2_msa.nf @@ -56,7 +56,7 @@ process RUN_ALPHAFOLD2_MSA { --output_dir=\$PWD \ --data_dir=\$PWD \ --uniref90_database_path=./uniref90/uniref90.fasta \ - --mgnify_database_path=./mgnify/mgy_clusters_2018_12.fa \ + --mgnify_database_path=./mgnify/mgy_clusters_2022_05.fa \ --template_mmcif_dir=./pdb_mmcif/mmcif_files \ --obsolete_pdbs_path=./pdb_mmcif/obsolete.dat \ $args