From 3e5e182dd5fd0bbb0d0d552c6de035b26d0714a4 Mon Sep 17 00:00:00 2001 From: JoseEspinosa Date: Fri, 21 Jul 2023 12:58:49 +0200 Subject: [PATCH] Update changelog --- CHANGELOG.md | 17 +++++++++-------- 1 file changed, 9 insertions(+), 8 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index e05930bd..da0a752c 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -10,17 +10,18 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - [#80](https://github.com/nf-core/proteinfold/pull/80) - Add `accelerator` directive to GPU processes when `params.use_gpu` is true. - [#81](https://github.com/nf-core/proteinfold/pull/81) - Support multiline fasta for colabfold multimer predictions. - [#89](https://github.com/nf-core/proteinfold/pull/89) - Fix issue with excessive symlinking in the pdb_mmcif database. -- [#90](https://github.com/nf-core/proteinfold/pull/90) - Update pipeline template to [nf-core/tools 2.8](https://github.com/nf-core/tools/releases/tag/2.8). -- [#91](https://github.com/nf-core/proteinfold/pull/91) - Update ColabFold version to 1.5.2 and AlphaFold version to 2.3.2 -- [#92](https://github.com/nf-core/proteinfold/pull/92) - Add ESMFold workflow to the pipeline. +- [PR #91](https://github.com/nf-core/proteinfold/pull/91) - Update ColabFold version to 1.5.2 and AlphaFold version to 2.3.2 +- [PR #92](https://github.com/nf-core/proteinfold/pull/92) - Add ESMFold workflow to the pipeline. - Update metro map to include ESMFold workflow. - Update modules to remove quay from container url. - [nf-core/tools#2286](https://github.com/nf-core/tools/issues/2286) - Set default container registry outside profile scope. -- [#97](https://github.com/nf-core/proteinfold/pull/97) - Fix issue with uniref30 missing path when using the full BFD database in AlphaFold. -- [#100](https://github.com/nf-core/proteinfold/pull/100) - Update containers for AlphaFold2 and ColabFold local modules. -- [#105](https://github.com/nf-core/proteinfold/pull/105) - Update COLABFOLD_BATCH docker container, metro map figure and nextflow schema description. -- [#106](https://github.com/nf-core/proteinfold/pull/106) - Add `singularity.registry = 'quay.io'` and bump NF version to 23.04.0 -- [#108](https://github.com/nf-core/proteinfold/pull/108) - Fix gunzip error when providing too many files when downloading PDBMMCIF database. +- [PR #97](https://github.com/nf-core/proteinfold/pull/97) - Fix issue with uniref30 missing path when using the full BFD database in AlphaFold. +- [PR #100](https://github.com/nf-core/proteinfold/pull/100) - Update containers for AlphaFold2 and ColabFold local modules. +- [PR #105](https://github.com/nf-core/proteinfold/pull/105) - Update COLABFOLD_BATCH docker container, metro map figure and nextflow schema description. +- [PR #106](https://github.com/nf-core/proteinfold/pull/106) - Add `singularity.registry = 'quay.io'` and bump NF version to 23.04.0 +- [PR #108](https://github.com/nf-core/proteinfold/pull/108) - Fix gunzip error when providing too many files when downloading PDBMMCIF database. +- [PR #111](https://github.com/nf-core/proteinfold/pull/111) - Update pipeline template to [nf-core/tools 2.9](https://github.com/nf-core/tools/releases/tag/2.9). +- [PR #112](https://github.com/nf-core/rnaseq/pull/112) - Use `nf-validation` plugin for parameter and samplesheet validation ## 1.0.0 - White Silver Reebok