From 34af8de8fbe9af8d23fa412f5f8d550199b36ced Mon Sep 17 00:00:00 2001
From: Damon-Lee Pointon <51855558+DLBPointon@users.noreply.github.com>
Date: Thu, 28 Sep 2023 13:31:20 +0100
Subject: [PATCH] Update main.nf to include stub (#3876)

* Update main.nf to include stub

Adding the stub for SeqKit Sliding

* Review fix
---
 modules/nf-core/seqkit/sliding/main.nf | 14 ++++++++++++++
 1 file changed, 14 insertions(+)

diff --git a/modules/nf-core/seqkit/sliding/main.nf b/modules/nf-core/seqkit/sliding/main.nf
index ffa570eb58f..0f385c68cef 100644
--- a/modules/nf-core/seqkit/sliding/main.nf
+++ b/modules/nf-core/seqkit/sliding/main.nf
@@ -37,4 +37,18 @@ process SEQKIT_SLIDING {
         seqkit: \$( seqkit | sed '3!d; s/Version: //' )
     END_VERSIONS
     """
+
+    stub:
+    prefix = task.ext.prefix ?: "${meta.id}"
+    if ("$fastx" ==~ /.+\.fasta$|.+\.fa$|.+\.fas$|.+\.fna$/) {
+        extension = "fasta"
+    }
+    """
+    touch ${prefix}.${extension}
+
+    cat <<-END_VERSIONS > versions.yml
+    "${task.process}":
+        seqkit: \$( seqkit | sed '3!d; s/Version: //' )
+    END_VERSIONS
+    """
 }