Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Refactor kit processing to be maintainable #338

Open
edmundmiller opened this issue Aug 25, 2023 · 1 comment
Open

Refactor kit processing to be maintainable #338

edmundmiller opened this issue Aug 25, 2023 · 1 comment

Comments

@edmundmiller
Copy link
Collaborator

@FelixKrueger we should make a json or yaml or csv or something of the table linked above, and then parse it either in the methylseq pipeline, or get it baked right into trimgalore, so we could do trimgalore --em-seq...

Not sure how that'll ever fix our schema being out of sync issue, though.

Originally posted by @emiller88 in #335 (review)
@sateeshperi
Copy link
Contributor

still needs to be done ?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@edmundmiller @sateeshperi