add cpu/gpu tags to tests

nf-core · Dec 2, 2024 · 67c8708 · 67c8708
1 parent c4d81d4
commit 67c8708
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Showing 16 changed files with 16 additions and 0 deletions.
diff --git a/tests/bismark_hisat.nf.test b/tests/bismark_hisat.nf.test
@@ -3,6 +3,7 @@ nextflow_pipeline {
     name "Test Workflow main.nf"
     script "../main.nf"
     config "./nextflow.config"
+    tag "cpu"
 
     test("Params: bismark_hisat") {
         when {

diff --git a/tests/bismark_hisat_rrbs.nf.test b/tests/bismark_hisat_rrbs.nf.test
@@ -3,6 +3,7 @@ nextflow_pipeline {
     name "Test Workflow main.nf"
     script "../main.nf"
     config "./nextflow.config"
+    tag "cpu"
 
     test("Params: bismark_hisat | rrbs") {
         when {

diff --git a/tests/bismark_hisat_save_reference_save_align_intermeds.nf.test b/tests/bismark_hisat_save_reference_save_align_intermeds.nf.test
@@ -3,6 +3,7 @@ nextflow_pipeline {
     name "Test Workflow main.nf"
     script "../main.nf"
     config "./nextflow.config"
+    tag "cpu"
 
     test("Params: bismark_hisat | save_reference | save_align_intermeds") {
         when {

diff --git a/tests/bismark_nomeseq.nf.test b/tests/bismark_nomeseq.nf.test
@@ -3,6 +3,7 @@ nextflow_pipeline {
     name "Test Workflow main.nf"
     script "../main.nf"
     config "./nextflow.config"
+    tag "cpu"
 
     test("Params: bismark | nomeseq") {
         when {

diff --git a/tests/bismark_rrbs.nf.test b/tests/bismark_rrbs.nf.test
@@ -3,6 +3,7 @@ nextflow_pipeline {
     name "Test Workflow main.nf"
     script "../main.nf"
     config "./nextflow.config"
+    tag "cpu"
 
     test("Params: bismark | rrbs") {
         when {

diff --git a/tests/bismark_run_preseq.nf.test b/tests/bismark_run_preseq.nf.test
@@ -3,6 +3,7 @@ nextflow_pipeline {
     name "Test Workflow main.nf"
     script "../main.nf"
     config "./nextflow.config"
+    tag "cpu"
 
     test("Params: bismark | run_preseq") {
         when {

diff --git a/tests/bismark_run_qualimap.nf.test b/tests/bismark_run_qualimap.nf.test
@@ -3,6 +3,7 @@ nextflow_pipeline {
     name "Test Workflow main.nf"
     script "../main.nf"
     config "./nextflow.config"
+    tag "cpu"
 
     test("Params: bismark | run_qualimap") {
         when {

diff --git a/tests/bismark_save_reference_save_align_intermeds.nf.test b/tests/bismark_save_reference_save_align_intermeds.nf.test
@@ -3,6 +3,7 @@ nextflow_pipeline {
     name "Test Workflow main.nf"
     script "../main.nf"
     config "./nextflow.config"
+    tag "cpu"
 
     test("Params: bismark | save_reference | save_align_intermeds") {
         when {

diff --git a/tests/bismark_skip_deduplication.nf.test b/tests/bismark_skip_deduplication.nf.test
@@ -3,6 +3,7 @@ nextflow_pipeline {
     name "Test Workflow main.nf"
     script "../main.nf"
     config "./nextflow.config"
+    tag "cpu"
 
     test("Params: bismark | skip_deduplication") {
         when {

diff --git a/tests/bismark_skip_multiqc.nf.test b/tests/bismark_skip_multiqc.nf.test
@@ -3,6 +3,7 @@ nextflow_pipeline {
     name "Test Workflow main.nf"
     script "../main.nf"
     config "./nextflow.config"
+    tag "cpu"
 
     test("Params: bismark | skip_multiqc") {
         when {

diff --git a/tests/bismark_skip_trimming.nf.test b/tests/bismark_skip_trimming.nf.test
@@ -3,6 +3,7 @@ nextflow_pipeline {
     name "Test Workflow main.nf"
     script "../main.nf"
     config "./nextflow.config"
+    tag "cpu"
 
     test("Params: bismark | skip_trimming") {
         when {

diff --git a/tests/bwameth_rrbs.nf.test b/tests/bwameth_rrbs.nf.test
@@ -3,6 +3,7 @@ nextflow_pipeline {
     name "Test Workflow main.nf"
     script "../main.nf"
     config "./nextflow.config"
+    tag "cpu"
 
     test("Params: bwameth | rrbs") {
         when {

diff --git a/tests/bwameth_save_reference_save_align_intermeds.nf.test b/tests/bwameth_save_reference_save_align_intermeds.nf.test
@@ -3,6 +3,7 @@ nextflow_pipeline {
     name "Test Workflow main.nf"
     script "../main.nf"
     config "./nextflow.config"
+    tag "cpu"
 
     test("Params: bwameth | save_reference | save_align_intermeds") {
         when {

diff --git a/tests/bwameth_skip_deduplication.nf.test b/tests/bwameth_skip_deduplication.nf.test
@@ -3,6 +3,7 @@ nextflow_pipeline {
     name "Test Workflow main.nf"
     script "../main.nf"
     config "./nextflow.config"
+    tag "cpu"
 
     test("Params: bwameth | skip_deduplication") {
         when {

diff --git a/tests/bwameth_skip_trimming.nf.test b/tests/bwameth_skip_trimming.nf.test
@@ -3,6 +3,7 @@ nextflow_pipeline {
     name "Test Workflow main.nf"
     script "../main.nf"
     config "./nextflow.config"
+    tag "cpu"
 
     test("Params: bwameth | skip_trimming") {
         when {

diff --git a/tests/default.nf.test b/tests/default.nf.test
@@ -3,6 +3,7 @@ nextflow_pipeline {
     name "Test Workflow main.nf"
     script "../main.nf"
     config "./nextflow.config"
+    tag "cpu"
 
     test("Params: default") {
         when {