From f253437d192ae93fc0c14d06f35d309940765870 Mon Sep 17 00:00:00 2001 From: znorgaard Date: Thu, 31 Oct 2024 08:34:47 -0700 Subject: [PATCH 1/2] fix: use 24.04.2 --- .github/workflows/ci.yml | 2 +- README.md | 2 +- nextflow.config | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 78a53bf..5a157c7 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -35,7 +35,7 @@ jobs: if [[ "${{ github.event_name }}" == "pull_request" && "${{ github.base_ref }}" == "dev" && "${{ matrix.NXF_VER }}" != "latest-everything" ]]; then echo matrix='["latest-everything"]' | tee -a $GITHUB_OUTPUT else - echo matrix='["latest-everything", "23.10.1"]' | tee -a $GITHUB_OUTPUT + echo matrix='["latest-everything", "24.04.2"]' | tee -a $GITHUB_OUTPUT fi test: diff --git a/README.md b/README.md index 4281113..fb78f68 100644 --- a/README.md +++ b/README.md @@ -9,7 +9,7 @@ [![GitHub Actions Linting Status](https://github.com/nf-core/fastquorum/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/fastquorum/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/fastquorum/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.11267672-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.11267672) [![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com) -[![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-%E2%89%A523.10.1-23aa62.svg)](https://www.nextflow.io/) +[![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-%E2%89%A524.04.2-23aa62.svg)](https://www.nextflow.io/) [![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/) [![run with docker](https://img.shields.io/badge/run%20with-docker-0db7ed?labelColor=000000&logo=docker)](https://www.docker.com/) [![run with singularity](https://img.shields.io/badge/run%20with-singularity-1d355c.svg?labelColor=000000)](https://sylabs.io/docs/) diff --git a/nextflow.config b/nextflow.config index ab33193..dcb59f5 100644 --- a/nextflow.config +++ b/nextflow.config @@ -240,7 +240,7 @@ manifest { homePage = 'https://github.com/nf-core/fastquorum' description = """fgbio Best Practices FASTQ to Consensus Pipeline""" mainScript = 'main.nf' - nextflowVersion = '!>=23.10.1' + nextflowVersion = '!>=24.04.2' version = '1.0.2dev' doi = '10.5281/zenodo.10456900,10.5281/zenodo.11267672' } From bf5f98e3009351f84e00d665aa4c23ecfd7fb7b2 Mon Sep 17 00:00:00 2001 From: znorgaard Date: Thu, 31 Oct 2024 08:47:38 -0700 Subject: [PATCH 2/2] chore: update changelog --- CHANGELOG.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index b640f65..13944d7 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -7,6 +7,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### Enhancements & fixes +- [PR #87](https://github.com/nf-core/fastquorum/pull/87) - Raise minimum version to 24.04.2 +- [PR #84](https://github.com/nf-core/fastquorum/pull/84) - Update to nf-core/tools template version 3.0.2 - [PR #79](https://github.com/nf-core/fastquorum/pull/79) and [PR #80](https://github.com/nf-core/fastquorum/pull/90) - Publish aligned consensus bai file ## [[1.0.1]](https://github.com/nf-core/fastquorum/releases/tag/1.0.1) -- 2024-09-10