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AdapterRemovalFixPrefix piping hides error messages #792

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jfy133 opened this issue Sep 9, 2021 · 0 comments · Fixed by #793

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bug

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jfy133 commented Sep 9, 2021

It seems that piping AdapterRemovalFixPrefix into pigz hiding the java error (presumably in stdout) in the gzip gzipped output file.

Should separate the two so java erros don't get hidden.

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Adapterremovalfixprefix sep #793

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