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Eager won't work on some clusters because for Java tools we have specified -Xms, therefore heapspace gets over allocated to compensate the amount allocated for the program itself.
If we remove Xms it would give us enough space not to crash on clusters which have very strict job requests.
Steps to reproduce
Steps to reproduce the behaviour:
Command line: nextflow run ...
See error: Please provide your error message
Expected behaviour
Log files
Have you provided the following extra information/files:
The command used to run the pipeline
The .nextflow.log file
The exact error:
System
Hardware:
Executor:
OS:
Version
Nextflow Installation
Version:
Container engine
Engine:
version:
Image tag:
Additional context
The text was updated successfully, but these errors were encountered:
Check Documentation
I have checked the following places for your error:
- nf-core/eager FAQ/troubleshooting can be found here
Description of the bug
Eager won't work on some clusters because for Java tools we have specified -Xms, therefore heapspace gets over allocated to compensate the amount allocated for the program itself.
If we remove Xms it would give us enough space not to crash on clusters which have very strict job requests.
Steps to reproduce
Steps to reproduce the behaviour:
nextflow run ...
Expected behaviour
Log files
Have you provided the following extra information/files:
.nextflow.log
fileSystem
Nextflow Installation
Container engine
Additional context
The text was updated successfully, but these errors were encountered: