From 56c58d46ce661d4982de918404cf27b522e823ba Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Fri, 8 Nov 2019 13:28:20 +0100 Subject: [PATCH] Made some slight markdown linting updates to allow internal images --- .github/markdownlint.yml | 4 ++++ docs/output.md | 3 +-- 2 files changed, 5 insertions(+), 2 deletions(-) diff --git a/.github/markdownlint.yml b/.github/markdownlint.yml index 96b12a703..b9f0f5a24 100644 --- a/.github/markdownlint.yml +++ b/.github/markdownlint.yml @@ -3,3 +3,7 @@ default: true, line-length: false no-duplicate-header: siblings_only: true +no-inline-html: + allowed_elements: + - img + - p diff --git a/docs/output.md b/docs/output.md index 767d3a4ee..db7563ef0 100644 --- a/docs/output.md +++ b/docs/output.md @@ -109,7 +109,7 @@ This shows a barplot with the overall number of sequences (x axis) in your raw l A section of the bar will also show an approximate estimation of the fraction of the total number of reads that are duplicates of another. This can derive from over-amplifcation of the library, or lots of single adapters. This can be later checked with the Deduplication check. A good library and sequencing run should have very low amounts of duplicates reads.

- +

#### Sequence Quality Histograms @@ -122,7 +122,6 @@ You will often see that the first 5 or so bases have slightly lower quality than

- Things to watch out for: * all positions having Phred scores less than 27