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[35/fec013] NOTE: Error submitting process 'NFCORE_AMPLISEQ:AMPLISEQ:QIIME2_SEQFILTERTABLE (rep-seqs.qza filter by filtered-table.qza)' for execution -- Execution is retried (1)
[50/f8638f] NOTE: Error submitting process 'NFCORE_AMPLISEQ:AMPLISEQ:QIIME2_SEQFILTERTABLE (rep-seqs.qza filter by filtered-table.qza)' for execution -- Execution is retried (2)
ERROR ~ Error executing process > 'NFCORE_AMPLISEQ:AMPLISEQ:QIIME2_SEQFILTERTABLE (rep-seqs.qza filter by filtered-table.qza)'
Caused by:
Failed to submit process to grid scheduler for execution
Command executed:
sbatch .command.run
Command exit status:
255
Command output:
sbatch: error: Invalid directive found in batch script: filter
Description of the bug
This came up in slack on https://nfcore.slack.com/archives/CEA7TBJGJ/p1727470357963289
Command used and terminal output
Relevant files
The following seems to fix the problem:
Appending to the command
-c tag.config
wheretag.config
contains:System information
No response
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