From 90e54a89560f755a8bd6a166f3860903ea6e3916 Mon Sep 17 00:00:00 2001 From: jtangrot Date: Mon, 3 Jul 2023 11:30:54 +0200 Subject: [PATCH] Add unite-fungi 8.3 again --- lib/WorkflowAmpliseq.groovy | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/WorkflowAmpliseq.groovy b/lib/WorkflowAmpliseq.groovy index 78c5b6b6..9f24a34d 100755 --- a/lib/WorkflowAmpliseq.groovy +++ b/lib/WorkflowAmpliseq.groovy @@ -90,7 +90,7 @@ class WorkflowAmpliseq { Nextflow.error("Incompatible parameters: `--filter_ssu` cannot be used with `--skip_barrnap` because filtering for SSU's depends on barrnap.") } - String[] sbdi_compatible_databases = ["coidb","coidb=221216","gtdb","gtdb=R07-RS207","gtdb=R06-RS202","gtdb=R05-RS95","midori2-co1","midori2-co1=gb250","pr2","pr2=5.0.0","pr2=4.14.0","pr2=4.13.0","rdp","rdp=18","sbdi-gtdb","sbdi-gtdb=R07-RS207-1","silva","silva=138","silva=132","unite-fungi","unite-fungi=9.0","unite-fungi=8.","unite-fungi=8.2","unite-alleuk","unite-alleuk=9.0","unite-alleuk=8.3","unite-alleuk=8.2"] + String[] sbdi_compatible_databases = ["coidb","coidb=221216","gtdb","gtdb=R07-RS207","gtdb=R06-RS202","gtdb=R05-RS95","midori2-co1","midori2-co1=gb250","pr2","pr2=5.0.0","pr2=4.14.0","pr2=4.13.0","rdp","rdp=18","sbdi-gtdb","sbdi-gtdb=R07-RS207-1","silva","silva=138","silva=132","unite-fungi","unite-fungi=9.0","unite-fungi=8.3","unite-fungi=8.2","unite-alleuk","unite-alleuk=9.0","unite-alleuk=8.3","unite-alleuk=8.2"] if (params.sbdiexport){ if (params.sintax_ref_taxonomy ) { if (!Arrays.stream(sbdi_compatible_databases).anyMatch(entry -> params.sintax_ref_taxonomy.toString().equals(entry)) ) {