From ebb8b0a5686471cc64f408d9d6badd580324fa78 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jeanette=20T=C3=A5ngrot?= Date: Mon, 18 Nov 2024 11:17:18 +0100 Subject: [PATCH 1/3] Add paths to corrected SH-files for UNITE 9.0 --- conf/ref_databases.config | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/conf/ref_databases.config b/conf/ref_databases.config index e640179a..cbb95a09 100644 --- a/conf/ref_databases.config +++ b/conf/ref_databases.config @@ -204,7 +204,7 @@ params { citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2023): UNITE general FASTA release for Fungi. Version 18.07.2023. UNITE Community. https://doi.org/10.15156/BIO/2938067" fmtscript = "taxref_reformat_unite.sh" dbversion = "UNITE-fungi v9.0 (https://doi.org/10.15156/BIO/2938067)" - shfile = [ "https://figshare.scilifelab.se/ndownloader/files/40788767", "https://figshare.scilifelab.se/ndownloader/files/40788770"] + shfile = [ "https://figshare.scilifelab.se/ndownloader/files/50055762", "https://figshare.scilifelab.se/ndownloader/files/50055765"] } 'unite-fungi=9.0' { title = "UNITE general FASTA release for Fungi - Version 9.0" @@ -212,7 +212,7 @@ params { citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2023): UNITE general FASTA release for Fungi. Version 18.07.2023. UNITE Community. https://doi.org/10.15156/BIO/2938067" fmtscript = "taxref_reformat_unite.sh" dbversion = "UNITE-fungi v9.0 (https://doi.org/10.15156/BIO/2938067)" - shfile = [ "https://figshare.scilifelab.se/ndownloader/files/40788767", "https://figshare.scilifelab.se/ndownloader/files/40788770"] + shfile = [ "https://figshare.scilifelab.se/ndownloader/files/50055762", "https://figshare.scilifelab.se/ndownloader/files/50055765"] } 'unite-fungi=8.3' { title = "UNITE general FASTA release for Fungi - Version 8.3" @@ -236,7 +236,7 @@ params { citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2023): UNITE general FASTA release for eukaryotes. Version 18.07.2023. UNITE Community. https://doi.org/10.15156/BIO/2938069" fmtscript = "taxref_reformat_unite.sh" dbversion = "UNITE-alleuk v9.0 (https://doi.org/10.15156/BIO/2938069)" - shfile = [ "https://figshare.scilifelab.se/ndownloader/files/40788773", "https://figshare.scilifelab.se/ndownloader/files/40788776"] + shfile = [ "https://figshare.scilifelab.se/ndownloader/files/50055768", "https://figshare.scilifelab.se/ndownloader/files/50055771"] } 'unite-alleuk=9.0' { title = "UNITE general FASTA release for eukaryotes - Version 9.0" @@ -244,7 +244,7 @@ params { citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2023): UNITE general FASTA release for eukaryotes. Version 18.07.2023. UNITE Community. https://doi.org/10.15156/BIO/2938069" fmtscript = "taxref_reformat_unite.sh" dbversion = "UNITE-alleuk v9.0 (https://doi.org/10.15156/BIO/2938069)" - shfile = [ "https://figshare.scilifelab.se/ndownloader/files/40788773", "https://figshare.scilifelab.se/ndownloader/files/40788776"] + shfile = [ "https://figshare.scilifelab.se/ndownloader/files/50055768", "https://figshare.scilifelab.se/ndownloader/files/50055771"] } 'unite-alleuk=8.3' { title = "UNITE general FASTA release for eukaryotes - Version 8.3" From 1f9f8d90859b39fcf40a921da1613ca2bb354de7 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jeanette=20T=C3=A5ngrot?= Date: Tue, 19 Nov 2024 13:52:00 +0100 Subject: [PATCH 2/3] Update changelog --- CHANGELOG.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 1ecf1f6b..e861f498 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -11,6 +11,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### `Fixed` +- [#800](https://github.com/nf-core/ampliseq/pull/800) - Fixed SH files for UNITE9.0 that were missing entries after API update in PlutoF + ### `Dependencies` ### `Removed` From 1e95a10e0c92998da2d12fbea72cdf434b37d243 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jeanette=20T=C3=A5ngrot?= Date: Tue, 19 Nov 2024 14:38:15 +0100 Subject: [PATCH 3/3] Update changelog --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index e861f498..6dbbcdfd 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -11,7 +11,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### `Fixed` -- [#800](https://github.com/nf-core/ampliseq/pull/800) - Fixed SH files for UNITE9.0 that were missing entries after API update in PlutoF +- [#800](https://github.com/nf-core/ampliseq/pull/800) - Fixed SH files for UNITE9.0, they were missing some entries due to a bug caused by API update in PlutoF ### `Dependencies`