From 12559326dc508dc8418f9a0edda524e5e14788b1 Mon Sep 17 00:00:00 2001 From: ivan-aksamentov Date: Fri, 31 May 2024 20:41:21 +0200 Subject: [PATCH] feat(cli): add Auspice JSON to CLI help and docs for `--input-dataset` Followup of: https://github.com/nextstrain/nextclade/pull/1455 --- packages/nextclade-cli/src/cli/nextclade_cli.rs | 2 ++ 1 file changed, 2 insertions(+) diff --git a/packages/nextclade-cli/src/cli/nextclade_cli.rs b/packages/nextclade-cli/src/cli/nextclade_cli.rs index 4788a5acd..da4024d58 100644 --- a/packages/nextclade-cli/src/cli/nextclade_cli.rs +++ b/packages/nextclade-cli/src/cli/nextclade_cli.rs @@ -313,6 +313,8 @@ pub struct NextcladeRunInputArgs { /// If both the `--input-dataset` and individual `--input-*` flags are provided, each individual flag overrides the /// corresponding file in the dataset. /// + /// Experimental feature: this argument also accepts a path to Auspice JSON file. In this case the files to be treated as a Nextclade dataset. This requires Auspice JSON file which contains `.root_sequence.nuc` field. + /// /// Please refer to Nextclade documentation for more details about Nextclade datasets and their files. #[clap(long, short = 'D')] #[clap(value_hint = ValueHint::AnyPath)]