From 4402d587a4102950ba70bb2dead6a84a5a200db7 Mon Sep 17 00:00:00 2001 From: james hadfield Date: Wed, 8 Apr 2020 20:21:09 +1200 Subject: [PATCH] rebuild docs --- .../advanced-functionality/view-settings.html | 3 +- .../view-settings/index.html | 3 +- docs/contributing/overview.html | 8 +++-- docs/contributing/overview/index.html | 8 +++-- docs/releases/changelog.html | 36 +++++++++++++++++-- docs/releases/changelog/index.html | 36 +++++++++++++++++-- docs/server/introduction.html | 4 +-- docs/server/introduction/index.html | 4 +-- 8 files changed, 86 insertions(+), 16 deletions(-) diff --git a/docs/advanced-functionality/view-settings.html b/docs/advanced-functionality/view-settings.html index 1e0ec5d65..e217390cc 100644 --- a/docs/advanced-functionality/view-settings.html +++ b/docs/advanced-functionality/view-settings.html @@ -109,6 +109,7 @@

nextstrain.org/flu/seasonal/h3n2/ha/2y?c=num_date&d=tree,map&m=div&r=region and you'll see how we've changed the coloring to a temporal scale (c=num_date), we're only showing the tree & map panels (d=tree,map), the tree x-axis is divergence (m=div) and the map resolution is region (r=region).

-
Last updated on 3/27/2020
← Displaying multiple treesAdding extra metadata via CSV/TSV →
\ No newline at end of file +
Last updated on 4/8/2020
← Displaying multiple treesAdding extra metadata via CSV/TSV →
\ No newline at end of file diff --git a/docs/advanced-functionality/view-settings/index.html b/docs/advanced-functionality/view-settings/index.html index 1e0ec5d65..e217390cc 100644 --- a/docs/advanced-functionality/view-settings/index.html +++ b/docs/advanced-functionality/view-settings/index.html @@ -109,6 +109,7 @@

nextstrain.org/flu/seasonal/h3n2/ha/2y?c=num_date&d=tree,map&m=div&r=region and you'll see how we've changed the coloring to a temporal scale (c=num_date), we're only showing the tree & map panels (d=tree,map), the tree x-axis is divergence (m=div) and the map resolution is region (r=region).

-
Last updated on 3/27/2020
← Displaying multiple treesAdding extra metadata via CSV/TSV →
\ No newline at end of file +
Last updated on 4/8/2020
← Displaying multiple treesAdding extra metadata via CSV/TSV →
\ No newline at end of file diff --git a/docs/contributing/overview.html b/docs/contributing/overview.html index bbce04660..42902eea4 100644 --- a/docs/contributing/overview.html +++ b/docs/contributing/overview.html @@ -61,8 +61,12 @@

This project strictly adheres to the Contributor Covenant Code of Conduct.

Please see the project boards for currently available issues.

Contributing code

-

Please see the main auspice docs for details on how to install and run auspice locally.

-

For pull requests, please use eslint as much as possible (via npm run lint).

+

Code contributions are welcomed! Please see the main auspice docs for details on how to install and run auspice from source.

+

Please comment on an open issue if you are working on it. +For changes unrelated to an open issue, please make an issue outlining what you would like to change/add.

+

Please ensure there are no linting errors by running npm run lint (which uses eslint). +In the future we will make this a requirement for PRs or commits.

+

Where possible, please rebase your work onto master rather than merging changes from master into your PR.

Contributing to Documentation

Nextstrain documentation is available at nextstrain.github.io/auspice/.

This documentation is built from files contained within the Auspice GitHub repo -- see the docs-src/README within the docs-src directory for more details and instructions on how to contribute.

diff --git a/docs/contributing/overview/index.html b/docs/contributing/overview/index.html index bbce04660..42902eea4 100644 --- a/docs/contributing/overview/index.html +++ b/docs/contributing/overview/index.html @@ -61,8 +61,12 @@

This project strictly adheres to the Contributor Covenant Code of Conduct.

Please see the project boards for currently available issues.

Contributing code

-

Please see the main auspice docs for details on how to install and run auspice locally.

-

For pull requests, please use eslint as much as possible (via npm run lint).

+

Code contributions are welcomed! Please see the main auspice docs for details on how to install and run auspice from source.

+

Please comment on an open issue if you are working on it. +For changes unrelated to an open issue, please make an issue outlining what you would like to change/add.

+

Please ensure there are no linting errors by running npm run lint (which uses eslint). +In the future we will make this a requirement for PRs or commits.

+

Where possible, please rebase your work onto master rather than merging changes from master into your PR.

Contributing to Documentation

Nextstrain documentation is available at nextstrain.github.io/auspice/.

This documentation is built from files contained within the Auspice GitHub repo -- see the docs-src/README within the docs-src directory for more details and instructions on how to contribute.

diff --git a/docs/releases/changelog.html b/docs/releases/changelog.html index a65af9bfb..06d7956bc 100644 --- a/docs/releases/changelog.html +++ b/docs/releases/changelog.html @@ -1,4 +1,4 @@ -Changelog · Auspice

Changelog

version 2.12.0 - 2020/04/08

+
    +
  • Add a legend to the map! See PR 935
    • +
  • Improve the animation smoothness, especially for datasets with limited temporal range. See PR 920
    • +
  • Add Japanese translation See PR 1045
    • +
  • Reinstate the lang URL query to allow the URL to choose the language.
    • +
  • Remove unnecessary lodash code from the bundles. See PR 1018
    • +
  • Update how the Root component is imported. See PR 1029
    • +
  • Fix errors in the sizing of the map buttons. See PR 1040
    • +
  • Improve rendering of tree tip labels by only counting the selected (visible) tips. See PR 1043
    • +
+

version 2.11.4 - 2020/04/04

+
    +
  • Temporarily remove SVG gradients in the tree due to bugs in multiple browsers. See PR 1042
    • +
+

version 2.11.3 - 2020/04/02

+
    +
  • Add Portuguese translation. See PR 1017
    • +
  • Fig bug where some branches would not display on certain browsers. See PR 1022
    • +
  • Fix bug with selected dates shown when no genomes were selected. See PR 1011
    • +
  • Show --includeTiming argument when viewing help (--help).
    • +
  • Add second node version to TravisCI. See PR 1023
    • +
  • Fix docs typo. See PR 1027
    • +
+

version 2.11.2 - 2020/03/30

+
    +
  • Add French translation - See PR 1020
    • +
  • Improve rendering of long strain names in strain search - See PR 1026
    • +
  • Lithuanian translation fixes
    • +
+

version 2.11.1 - 2020/03/28

  • Add Lithuanian translation
  • Fig bugs in translation strings which contained : or .
    • @@ -960,4 +990,4 @@

    version 1.7.0 - 2017/10/17

    version - 2018/01/18

    -
Last updated on 10/14/2019
← Converting a narrative to PDFAuspice Version 2.0 →
\ No newline at end of file +
Last updated on 10/14/2019
← Converting a narrative to PDFAuspice Version 2.0 →
\ No newline at end of file diff --git a/docs/releases/changelog/index.html b/docs/releases/changelog/index.html index a65af9bfb..06d7956bc 100644 --- a/docs/releases/changelog/index.html +++ b/docs/releases/changelog/index.html @@ -1,4 +1,4 @@ -Changelog · Auspice

Changelog

version 2.12.0 - 2020/04/08

+
    +
  • Add a legend to the map! See PR 935
    • +
  • Improve the animation smoothness, especially for datasets with limited temporal range. See PR 920
    • +
  • Add Japanese translation See PR 1045
    • +
  • Reinstate the lang URL query to allow the URL to choose the language.
    • +
  • Remove unnecessary lodash code from the bundles. See PR 1018
    • +
  • Update how the Root component is imported. See PR 1029
    • +
  • Fix errors in the sizing of the map buttons. See PR 1040
    • +
  • Improve rendering of tree tip labels by only counting the selected (visible) tips. See PR 1043
    • +
+

version 2.11.4 - 2020/04/04

+
    +
  • Temporarily remove SVG gradients in the tree due to bugs in multiple browsers. See PR 1042
    • +
+

version 2.11.3 - 2020/04/02

+
    +
  • Add Portuguese translation. See PR 1017
    • +
  • Fig bug where some branches would not display on certain browsers. See PR 1022
    • +
  • Fix bug with selected dates shown when no genomes were selected. See PR 1011
    • +
  • Show --includeTiming argument when viewing help (--help).
    • +
  • Add second node version to TravisCI. See PR 1023
    • +
  • Fix docs typo. See PR 1027
    • +
+

version 2.11.2 - 2020/03/30

+
    +
  • Add French translation - See PR 1020
    • +
  • Improve rendering of long strain names in strain search - See PR 1026
    • +
  • Lithuanian translation fixes
    • +
+

version 2.11.1 - 2020/03/28

  • Add Lithuanian translation
  • Fig bugs in translation strings which contained : or .
    • @@ -960,4 +990,4 @@

    version 1.7.0 - 2017/10/17

    version - 2018/01/18

    -
Last updated on 10/14/2019
← Converting a narrative to PDFAuspice Version 2.0 →
\ No newline at end of file +
Last updated on 10/14/2019
← Converting a narrative to PDFAuspice Version 2.0 →
\ No newline at end of file diff --git a/docs/server/introduction.html b/docs/server/introduction.html index f05662c47..715af507e 100644 --- a/docs/server/introduction.html +++ b/docs/server/introduction.html @@ -78,7 +78,7 @@

nextstrain.org/charon/getAvailable you'll see Nextstrain's available datasets.

See the server API for details about each of these requests.

-

Note that "/charon" can be changed to any address you wich by customising the client at build time. +

Note that "/charon" can be changed to any address you wish by customising the client at build time. See the client-cusomisation API for more details.

The "Default" Auspice Server

@@ -105,4 +105,4 @@

We use option (b) by specifing a npm script called heroku-postbuild. -
Last updated on 1/2/2020
← Requests Made from the ClientServer API →
\ No newline at end of file +
Last updated on 3/31/2020
← Requests Made from the ClientServer API →
\ No newline at end of file diff --git a/docs/server/introduction/index.html b/docs/server/introduction/index.html index f05662c47..715af507e 100644 --- a/docs/server/introduction/index.html +++ b/docs/server/introduction/index.html @@ -78,7 +78,7 @@

nextstrain.org/charon/getAvailable you'll see Nextstrain's available datasets.

See the server API for details about each of these requests.

-

Note that "/charon" can be changed to any address you wich by customising the client at build time. +

Note that "/charon" can be changed to any address you wish by customising the client at build time. See the client-cusomisation API for more details.

The "Default" Auspice Server

@@ -105,4 +105,4 @@

We use option (b) by specifing a npm script called heroku-postbuild. -
Last updated on 1/2/2020
← Requests Made from the ClientServer API →
\ No newline at end of file +
Last updated on 3/31/2020
← Requests Made from the ClientServer API →
\ No newline at end of file