From 7e57f8a56507a40be5a6c146b2057e3c7104a305 Mon Sep 17 00:00:00 2001 From: James Kent Date: Wed, 10 Jan 2024 16:38:38 -0600 Subject: [PATCH 1/3] delete large variable --- compose_runner/run.py | 1 + 1 file changed, 1 insertion(+) diff --git a/compose_runner/run.py b/compose_runner/run.py index 341f428..4b80537 100644 --- a/compose_runner/run.py +++ b/compose_runner/run.py @@ -232,6 +232,7 @@ def apply_filter(self, studyset, annotation): reference_studyset = Studyset(reference_studyset_dict) + del reference_studyset_dict # get study ids from studyset study_ids = set([s.id for s in studyset.studies]) From d2bd5af393471a3512dd150ef6a4fcd880def091 Mon Sep 17 00:00:00 2001 From: James Kent Date: Wed, 10 Jan 2024 16:39:11 -0600 Subject: [PATCH 2/3] add commented test for mkdachi2 --- compose_runner/tests/test_run.py | 8 ++++++++ 1 file changed, 8 insertions(+) diff --git a/compose_runner/tests/test_run.py b/compose_runner/tests/test_run.py index 6413261..d1be9bf 100644 --- a/compose_runner/tests/test_run.py +++ b/compose_runner/tests/test_run.py @@ -54,3 +54,11 @@ def test_run_string_group_comparison_workflow(): # meta_analysis_id="4WELjap2yCJm", # ) # runner.run_workflow() + + +# @pytest.mark.vcr(record_mode="once") +# def test_mkdachis_comparison_workflow(): +# runner = Runner( +# meta_analysis_id="6Grzwzs3t7YB", +# ) +# runner.run_workflow() From b2cc282dbb9dd5b6bd40c1f3d1fc938d69339eef Mon Sep 17 00:00:00 2001 From: James Kent Date: Wed, 10 Jan 2024 16:39:37 -0600 Subject: [PATCH 3/3] bump the nimare version --- pyproject.toml | 2 +- requirements.txt | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index b97e9cd..712aec5 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -14,7 +14,7 @@ classifiers = [ "Programming Language :: Python :: 3", ] dynamic = ["version"] -dependencies = ["nimare==0.2.0", "click"] +dependencies = ["nimare==0.2.1rc1", "click"] [project.urls] Repository = "https://github.com/neurostuff/compose-runner" diff --git a/requirements.txt b/requirements.txt index 1a0de81..aca69b9 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,2 +1,2 @@ -nimare==0.2.0 +nimare==0.2.1rc1 click