v0.4.0

• Marginalize command now (optionally) takes list of strains to project onto.
• Command line arguments and flags can now be mixed in order.
• Export can filter out any duplications.

v0.3.0

Added command line options:

• Build: -u => force sequences to uppercase letters
• Polish: -c => preserve case (uses MAFFT command line flag)

Additionally, removed bug associated with sequences mapping as empty intervals to blocks.

Lastly, large improvement to the algorithm's multicore usage by balancing the initial guide tree.

v0.2.1

Modified CLI to accept input on standard input for all subcommands. This allows for a nicer chaining of pangraph functions from the shell. Additionally, there were many small bugs that are fixed.

v0.2.0 binary

chore: updated mash documentation

pangraph v0.1-alpha

Source code bundled as a relocatable application. Currently only for Linux-based operating systems but intend to release for MacOSX as well.