Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

sequence comparison in compare_contigs.py #5

Open
seanrjohnson opened this issue Apr 21, 2024 · 0 comments
Open

sequence comparison in compare_contigs.py #5

seanrjohnson opened this issue Apr 21, 2024 · 0 comments
Labels
enhancement New feature or request

Comments

@seanrjohnson
Copy link
Collaborator

Right now compare_contigs.py compares contigs based on domain content, it would be nice to also have some sequence-comparison based metrics. Such as, nucleotide or protein kmer jaccard or adjacency index, or local or global alignment methods, for example the Domain Sequence Similarity metric (https://www.biorxiv.org/content/10.1101/445270v1)
@seanrjohnson seanrjohnson added the enhancement New feature or request label Apr 21, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
enhancement New feature or request
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@seanrjohnson