diff --git a/module_notebooks/02-building-graphs-with-pggb.ipynb b/module_notebooks/02-building-graphs-with-pggb.ipynb
index f2fceab..e9d123c 100644
--- a/module_notebooks/02-building-graphs-with-pggb.ipynb
+++ b/module_notebooks/02-building-graphs-with-pggb.ipynb
@@ -411,116 +411,116 @@
     "\n",
     "!# Note: Your files might be named slightly differently (\"35d2267\" might be something different in your files).\n",
     "\n",
-    "!pggb -i output_all/yprp.all.fa.gz.35d2267.community.0.fa \\\n",
-    "     -o output_all/yprp.all.fa.gz.35d2267.community.0.fa.out \\\n",
-    "     -s 5000 -l 25000 -p 95 -c 1 -K 19 -F 0.001 -g 30 \\\n",
-    "     -k 23 -f 0 -B 10M \\\n",
-    "     -n 12 -j 0 -e 0 -G 700,900,1100 -P 1,19,39,3,81,1 -O 0.001 -d 100 -Q Consensus_ \\\n",
+    "!pggb -i output_all/yprp.all.fa.gz.35d2267.community.0.fa \\\\  \n",
+    "     -o output_all/yprp.all.fa.gz.35d2267.community.0.fa.out \\\\  \n",
+    "     -s 5000 -l 25000 -p 95 -c 1 -K 19 -F 0.001 -g 30 \\\\  \n",
+    "     -k 23 -f 0 -B 10M \\\\  \n",
+    "     -n 12 -j 0 -e 0 -G 700,900,1100 -P 1,19,39,3,81,1 -O 0.001 -d 100 -Q Consensus_ \\\\  \n",
     "     -Y \"#\" --threads 20 --poa-threads 20\n",
     "\n",
-    "!pggb -i output_all/yprp.all.fa.gz.35d2267.community.1.fa \\\n",
-    "     -o output_all/yprp.all.fa.gz.35d2267.community.1.fa.out \\\n",
-    "     -s 5000 -l 25000 -p 95 -c 1 -K 19 -F 0.001 -g 30 \\\n",
-    "     -k 23 -f 0 -B 10M \\\n",
-    "     -n 12 -j 0 -e 0 -G 700,900,1100 -P 1,19,39,3,81,1 -O 0.001 -d 100 -Q Consensus_ \\\n",
+    "!pggb -i output_all/yprp.all.fa.gz.35d2267.community.1.fa \\\\  \n",
+    "     -o output_all/yprp.all.fa.gz.35d2267.community.1.fa.out \\\\  \n",
+    "     -s 5000 -l 25000 -p 95 -c 1 -K 19 -F 0.001 -g 30 \\\\  \n",
+    "     -k 23 -f 0 -B 10M \\\\  \n",
+    "     -n 12 -j 0 -e 0 -G 700,900,1100 -P 1,19,39,3,81,1 -O 0.001 -d 100 -Q Consensus_ \\\\  \n",
     "     -Y \"#\" --threads 20 --poa-threads 20\n",
     "\n",
-    "!pggb -i output_all/yprp.all.fa.gz.35d2267.community.10.fa \\\n",
-    "     -o output_all/yprp.all.fa.gz.35d2267.community.10.fa.out \\\n",
-    "     -s 5000 -l 25000 -p 95 -c 1 -K 19 -F 0.001 -g 30 \\\n",
-    "     -k 23 -f 0 -B 10M \\\n",
-    "     -n 12 -j 0 -e 0 -G 700,900,1100 -P 1,19,39,3,81,1 -O 0.001 -d 100 -Q Consensus_ \\\n",
+    "!pggb -i output_all/yprp.all.fa.gz.35d2267.community.10.fa \\\\  \n",
+    "     -o output_all/yprp.all.fa.gz.35d2267.community.10.fa.out \\\\  \n",
+    "     -s 5000 -l 25000 -p 95 -c 1 -K 19 -F 0.001 -g 30 \\\\  \n",
+    "     -k 23 -f 0 -B 10M \\\\  \n",
+    "     -n 12 -j 0 -e 0 -G 700,900,1100 -P 1,19,39,3,81,1 -O 0.001 -d 100 -Q Consensus_ \\\\  \n",
     "     -Y \"#\" --threads 20 --poa-threads 20\n",
     "\n",
-    "!pggb -i output_all/yprp.all.fa.gz.35d2267.community.11.fa \\\n",
-    "     -o output_all/yprp.all.fa.gz.35d2267.community.11.fa.out \\\n",
-    "     -s 5000 -l 25000 -p 95 -c 1 -K 19 -F 0.001 -g 30 \\\n",
-    "     -k 23 -f 0 -B 10M \\\n",
-    "     -n 12 -j 0 -e 0 -G 700,900,1100 -P 1,19,39,3,81,1 -O 0.001 -d 100 -Q Consensus_ \\\n",
+    "!pggb -i output_all/yprp.all.fa.gz.35d2267.community.11.fa \\\\  \n",
+    "     -o output_all/yprp.all.fa.gz.35d2267.community.11.fa.out \\\\  \n",
+    "     -s 5000 -l 25000 -p 95 -c 1 -K 19 -F 0.001 -g 30 \\\\  \n",
+    "     -k 23 -f 0 -B 10M \\\\  \n",
+    "     -n 12 -j 0 -e 0 -G 700,900,1100 -P 1,19,39,3,81,1 -O 0.001 -d 100 -Q Consensus_ \\\\  \n",
     "     -Y \"#\" --threads 20 --poa-threads 20\n",
     "\n",
-    "!pggb -i output_all/yprp.all.fa.gz.35d2267.community.12.fa \\\n",
-    "     -o output_all/yprp.all.fa.gz.35d2267.community.12.fa.out \\\n",
-    "     -s 5000 -l 25000 -p 95 -c 1 -K 19 -F 0.001 -g 30 \\\n",
-    "     -k 23 -f 0 -B 10M \\\n",
-    "     -n 12 -j 0 -e 0 -G 700,900,1100 -P 1,19,39,3,81,1 -O 0.001 -d 100 -Q Consensus_ \\\n",
+    "!pggb -i output_all/yprp.all.fa.gz.35d2267.community.12.fa \\\\  \n",
+    "     -o output_all/yprp.all.fa.gz.35d2267.community.12.fa.out \\\\  \n",
+    "     -s 5000 -l 25000 -p 95 -c 1 -K 19 -F 0.001 -g 30 \\\\  \n",
+    "     -k 23 -f 0 -B 10M \\\\  \n",
+    "     -n 12 -j 0 -e 0 -G 700,900,1100 -P 1,19,39,3,81,1 -O 0.001 -d 100 -Q Consensus_ \\\\  \n",
     "     -Y \"#\" --threads 20 --poa-threads 20\n",
     "\n",
-    "!pggb -i output_all/yprp.all.fa.gz.35d2267.community.13.fa \\\n",
-    "     -o output_all/yprp.all.fa.gz.35d2267.community.13.fa.out \\\n",
-    "     -s 5000 -l 25000 -p 95 -c 1 -K 19 -F 0.001 -g 30 \\\n",
-    "     -k 23 -f 0 -B 10M \\\n",
-    "     -n 12 -j 0 -e 0 -G 700,900,1100 -P 1,19,39,3,81,1 -O 0.001 -d 100 -Q Consensus_ \\\n",
+    "!pggb -i output_all/yprp.all.fa.gz.35d2267.community.13.fa \\\\  \n",
+    "     -o output_all/yprp.all.fa.gz.35d2267.community.13.fa.out \\\\  \n",
+    "     -s 5000 -l 25000 -p 95 -c 1 -K 19 -F 0.001 -g 30 \\\\  \n",
+    "     -k 23 -f 0 -B 10M \\\\  \n",
+    "     -n 12 -j 0 -e 0 -G 700,900,1100 -P 1,19,39,3,81,1 -O 0.001 -d 100 -Q Consensus_ \\\\  \n",
     "     -Y \"#\" --threads 20 --poa-threads 20\n",
     "\n",
-    "!pggb -i output_all/yprp.all.fa.gz.35d2267.community.14.fa \\\n",
-    "     -o output_all/yprp.all.fa.gz.35d2267.community.14.fa.out \\\n",
-    "     -s 5000 -l 25000 -p 95 -c 1 -K 19 -F 0.001 -g 30 \\\n",
-    "     -k 23 -f 0 -B 10M \\\n",
-    "     -n 12 -j 0 -e 0 -G 700,900,1100 -P 1,19,39,3,81,1 -O 0.001 -d 100 -Q Consensus_ \\\n",
+    "!pggb -i output_all/yprp.all.fa.gz.35d2267.community.14.fa \\\\  \n",
+    "     -o output_all/yprp.all.fa.gz.35d2267.community.14.fa.out \\\\  \n",
+    "     -s 5000 -l 25000 -p 95 -c 1 -K 19 -F 0.001 -g 30 \\\\  \n",
+    "     -k 23 -f 0 -B 10M \\\\  \n",
+    "     -n 12 -j 0 -e 0 -G 700,900,1100 -P 1,19,39,3,81,1 -O 0.001 -d 100 -Q Consensus_ \\\\  \n",
     "     -Y \"#\" --threads 20 --poa-threads 20\n",
     "\n",
-    "!pggb -i output_all/yprp.all.fa.gz.35d2267.community.15.fa \\\n",
-    "     -o output_all/yprp.all.fa.gz.35d2267.community.15.fa.out \\\n",
-    "     -s 5000 -l 25000 -p 95 -c 1 -K 19 -F 0.001 -g 30 \\\n",
-    "     -k 23 -f 0 -B 10M \\\n",
-    "     -n 12 -j 0 -e 0 -G 700,900,1100 -P 1,19,39,3,81,1 -O 0.001 -d 100 -Q Consensus_ \\\n",
+    "!pggb -i output_all/yprp.all.fa.gz.35d2267.community.15.fa \\\\  \n",
+    "     -o output_all/yprp.all.fa.gz.35d2267.community.15.fa.out \\\\  \n",
+    "     -s 5000 -l 25000 -p 95 -c 1 -K 19 -F 0.001 -g 30 \\\\  \n",
+    "     -k 23 -f 0 -B 10M \\\\  \n",
+    "     -n 12 -j 0 -e 0 -G 700,900,1100 -P 1,19,39,3,81,1 -O 0.001 -d 100 -Q Consensus_ \\\\  \n",
     "     -Y \"#\" --threads 20 --poa-threads 20\n",
     "\n",
-    "!pggb -i output_all/yprp.all.fa.gz.35d2267.community.2.fa \\\n",
-    "     -o output_all/yprp.all.fa.gz.35d2267.community.2.fa.out \\\n",
-    "     -s 5000 -l 25000 -p 95 -c 1 -K 19 -F 0.001 -g 30 \\\n",
-    "     -k 23 -f 0 -B 10M \\\n",
-    "     -n 12 -j 0 -e 0 -G 700,900,1100 -P 1,19,39,3,81,1 -O 0.001 -d 100 -Q Consensus_ \\\n",
+    "!pggb -i output_all/yprp.all.fa.gz.35d2267.community.2.fa \\\\  \n",
+    "     -o output_all/yprp.all.fa.gz.35d2267.community.2.fa.out \\\\  \n",
+    "     -s 5000 -l 25000 -p 95 -c 1 -K 19 -F 0.001 -g 30 \\\\  \n",
+    "     -k 23 -f 0 -B 10M \\\\  \n",
+    "     -n 12 -j 0 -e 0 -G 700,900,1100 -P 1,19,39,3,81,1 -O 0.001 -d 100 -Q Consensus_ \\\\  \n",
     "     -Y \"#\" --threads 20 --poa-threads 20\n",
     "\n",
-    "!pggb -i output_all/yprp.all.fa.gz.35d2267.community.3.fa \\\n",
-    "     -o output_all/yprp.all.fa.gz.35d2267.community.3.fa.out \\\n",
-    "     -s 5000 -l 25000 -p 95 -c 1 -K 19 -F 0.001 -g 30 \\\n",
-    "     -k 23 -f 0 -B 10M \\\n",
-    "     -n 12 -j 0 -e 0 -G 700,900,1100 -P 1,19,39,3,81,1 -O 0.001 -d 100 -Q Consensus_ \\\n",
+    "!pggb -i output_all/yprp.all.fa.gz.35d2267.community.3.fa \\\\  \n",
+    "     -o output_all/yprp.all.fa.gz.35d2267.community.3.fa.out \\\\  \n",
+    "     -s 5000 -l 25000 -p 95 -c 1 -K 19 -F 0.001 -g 30 \\\\  \n",
+    "     -k 23 -f 0 -B 10M \\\\  \n",
+    "     -n 12 -j 0 -e 0 -G 700,900,1100 -P 1,19,39,3,81,1 -O 0.001 -d 100 -Q Consensus_ \\\\  \n",
     "     -Y \"#\" --threads 20 --poa-threads 20\n",
     "\n",
-    "!pggb -i output_all/yprp.all.fa.gz.35d2267.community.4.fa \\\n",
-    "     -o output_all/yprp.all.fa.gz.35d2267.community.4.fa.out \\\n",
-    "     -s 5000 -l 25000 -p 95 -c 1 -K 19 -F 0.001 -g 30 \\\n",
-    "     -k 23 -f 0 -B 10M \\\n",
-    "     -n 12 -j 0 -e 0 -G 700,900,1100 -P 1,19,39,3,81,1 -O 0.001 -d 100 -Q Consensus_ \\\n",
+    "!pggb -i output_all/yprp.all.fa.gz.35d2267.community.4.fa \\\\  \n",
+    "     -o output_all/yprp.all.fa.gz.35d2267.community.4.fa.out \\\\  \n",
+    "     -s 5000 -l 25000 -p 95 -c 1 -K 19 -F 0.001 -g 30 \\\\  \n",
+    "     -k 23 -f 0 -B 10M \\\\  \n",
+    "     -n 12 -j 0 -e 0 -G 700,900,1100 -P 1,19,39,3,81,1 -O 0.001 -d 100 -Q Consensus_ \\\\  \n",
     "     -Y \"#\" --threads 20 --poa-threads 20\n",
     "\n",
-    "!pggb -i output_all/yprp.all.fa.gz.35d2267.community.5.fa \\\n",
-    "     -o output_all/yprp.all.fa.gz.35d2267.community.5.fa.out \\\n",
-    "     -s 5000 -l 25000 -p 95 -c 1 -K 19 -F 0.001 -g 30 \\\n",
-    "     -k 23 -f 0 -B 10M \\\n",
-    "     -n 12 -j 0 -e 0 -G 700,900,1100 -P 1,19,39,3,81,1 -O 0.001 -d 100 -Q Consensus_ \\\n",
+    "!pggb -i output_all/yprp.all.fa.gz.35d2267.community.5.fa \\\\  \n",
+    "     -o output_all/yprp.all.fa.gz.35d2267.community.5.fa.out \\\\  \n",
+    "     -s 5000 -l 25000 -p 95 -c 1 -K 19 -F 0.001 -g 30 \\\\  \n",
+    "     -k 23 -f 0 -B 10M \\\\  \n",
+    "     -n 12 -j 0 -e 0 -G 700,900,1100 -P 1,19,39,3,81,1 -O 0.001 -d 100 -Q Consensus_ \\\\  \n",
     "     -Y \"#\" --threads 20 --poa-threads 20\n",
     "\n",
-    "!pggb -i output_all/yprp.all.fa.gz.35d2267.community.6.fa \\\n",
-    "     -o output_all/yprp.all.fa.gz.35d2267.community.6.fa.out \\\n",
-    "     -s 5000 -l 25000 -p 95 -c 1 -K 19 -F 0.001 -g 30 \\\n",
-    "     -k 23 -f 0 -B 10M \\\n",
-    "     -n 12 -j 0 -e 0 -G 700,900,1100 -P 1,19,39,3,81,1 -O 0.001 -d 100 -Q Consensus_ \\\n",
+    "!pggb -i output_all/yprp.all.fa.gz.35d2267.community.6.fa \\\\  \n",
+    "     -o output_all/yprp.all.fa.gz.35d2267.community.6.fa.out \\\\  \n",
+    "     -s 5000 -l 25000 -p 95 -c 1 -K 19 -F 0.001 -g 30 \\\\  \n",
+    "     -k 23 -f 0 -B 10M \\\\  \n",
+    "     -n 12 -j 0 -e 0 -G 700,900,1100 -P 1,19,39,3,81,1 -O 0.001 -d 100 -Q Consensus_ \\\\  \n",
     "     -Y \"#\" --threads 20 --poa-threads 20\n",
     "\n",
-    "!pggb -i output_all/yprp.all.fa.gz.35d2267.community.7.fa \\\n",
-    "     -o output_all/yprp.all.fa.gz.35d2267.community.7.fa.out \\\n",
-    "     -s 5000 -l 25000 -p 95 -c 1 -K 19 -F 0.001 -g 30 \\\n",
-    "     -k 23 -f 0 -B 10M \\\n",
-    "     -n 12 -j 0 -e 0 -G 700,900,1100 -P 1,19,39,3,81,1 -O 0.001 -d 100 -Q Consensus_ \\\n",
+    "!pggb -i output_all/yprp.all.fa.gz.35d2267.community.7.fa \\\\  \n",
+    "     -o output_all/yprp.all.fa.gz.35d2267.community.7.fa.out \\\\  \n",
+    "     -s 5000 -l 25000 -p 95 -c 1 -K 19 -F 0.001 -g 30 \\\\  \n",
+    "     -k 23 -f 0 -B 10M \\\\  \n",
+    "     -n 12 -j 0 -e 0 -G 700,900,1100 -P 1,19,39,3,81,1 -O 0.001 -d 100 -Q Consensus_ \\\\  \n",
     "     -Y \"#\" --threads 20 --poa-threads 20\n",
     "\n",
-    "!pggb -i output_all/yprp.all.fa.gz.35d2267.community.8.fa \\\n",
-    "     -o output_all/yprp.all.fa.gz.35d2267.community.8.fa.out \\\n",
-    "     -s 5000 -l 25000 -p 95 -c 1 -K 19 -F 0.001 -g 30 \\\n",
-    "     -k 23 -f 0 -B 10M \\\n",
-    "     -n 12 -j 0 -e 0 -G 700,900,1100 -P 1,19,39,3,81,1 -O 0.001 -d 100 -Q Consensus_ \\\n",
+    "!pggb -i output_all/yprp.all.fa.gz.35d2267.community.8.fa \\\\  \n",
+    "     -o output_all/yprp.all.fa.gz.35d2267.community.8.fa.out \\\\  \n",
+    "     -s 5000 -l 25000 -p 95 -c 1 -K 19 -F 0.001 -g 30 \\\\  \n",
+    "     -k 23 -f 0 -B 10M \\\\  \n",
+    "     -n 12 -j 0 -e 0 -G 700,900,1100 -P 1,19,39,3,81,1 -O 0.001 -d 100 -Q Consensus_ \\\\  \n",
     "     -Y \"#\" --threads 20 --poa-threads 20\n",
     "\n",
-    "!pggb -i output_all/yprp.all.fa.gz.35d2267.community.9.fa \\\n",
-    "     -o output_all/yprp.all.fa.gz.35d2267.community.9.fa.out \\\n",
-    "     -s 5000 -l 25000 -p 95 -c 1 -K 19 -F 0.001 -g 30 \\\n",
-    "     -k 23 -f 0 -B 10M \\\n",
-    "     -n 12 -j 0 -e 0 -G 700,900,1100 -P 1,19,39,3,81,1 -O 0.001 -d 100 -Q Consensus_ \\\n",
+    "!pggb -i output_all/yprp.all.fa.gz.35d2267.community.9.fa \\\\  \n",
+    "     -o output_all/yprp.all.fa.gz.35d2267.community.9.fa.out \\\\  \n",
+    "     -s 5000 -l 25000 -p 95 -c 1 -K 19 -F 0.001 -g 30 \\\\  \n",
+    "     -k 23 -f 0 -B 10M \\\\  \n",
+    "     -n 12 -j 0 -e 0 -G 700,900,1100 -P 1,19,39,3,81,1 -O 0.001 -d 100 -Q Consensus_ \\\\  \n",
     "     -Y \"#\" --threads 20 --poa-threads 20\n",
     "\n",
     "</details>"
@@ -610,7 +610,21 @@
    ]
   }
  ],
- "metadata": {},
+ "metadata": {
+  "environment": {
+   "kernel": "",
+   "name": "workbench-notebooks.m126",
+   "type": "gcloud",
+   "uri": "us-docker.pkg.dev/deeplearning-platform-release/gcr.io/workbench-notebooks:m126"
+  },
+  "kernelspec": {
+   "display_name": "",
+   "name": ""
+  },
+  "language_info": {
+   "name": ""
+  }
+ },
  "nbformat": 4,
  "nbformat_minor": 4
 }