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Missing information the the REST API payload for ontology classes #59

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cmungall opened this issue Dec 11, 2019 · 0 comments
Open
5 tasks

Missing information the the REST API payload for ontology classes #59

cmungall opened this issue Dec 11, 2019 · 0 comments

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@cmungall
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cmungall commented Dec 11, 2019

http://data.bioontology.org/ontologies/UBERON/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FUBERON_0002270 (hyaloid artery)

  • missing axiom annotations. In the OWL the definition and the synonym have provenance, modeled using axiom annotations, as is standard for OBO, but these are missing in the API
  • missing synonym scopes and synonym types. In the OWL arteria hyaloidea is both EXACT and LATIN. hyaloid arteries is RELATED and PLURAL. But this information is missing here
  • missing curated mappings. In Uberon we have high quality curated xrefs but these are not visible in the API. http://data.bioontology.org/ontologies/UBERON/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FUBERON_0002270/mappings links to LOOM mappings but the curated mappings should take priority
  • semantic type is blank. (we should have a broader discussion about obo-core and biolink model here)
  • the parents link takes us to the isa and part-of parents, but
    • there is no way to tell the is-a from part-of
    • we are missing other logical axioms such as develops-from

Looking at an obsolete class: http://data.bioontology.org/ontologies/UBERON/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FUBERON_0002003

this is missing the replaced_by field

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