Query about blacklists

[jantusan]

Hello,

Thank you for developing this tool, I have found it really useful!

I was wondering if you could clarify that use of the --blacklist and --bedsubtract, in particular if they work in a similar way as the DeepTools parameter –blackListFileName. This is the explanation in the help:

 	--blacklist|-c <file>	Input file with list of chromosomes to blacklist during scaling analysis

	--bedsubtract|-u <int>	BED file with regions to subtract when computing coverage for normalization
				These coordinates should not overlap so reads are not counted multiple times

Thank you very much in advance,
Javier