.gitignore

# common scala config
*~
.DS_Store
.artifactory
.idea/*
**/.idea/*
.ensime_cache/*
.config/*
.local/*
.ensime
tags
**/*.tags
!/.idea/inspectionProfiles/
.idea/inspectionProfiles/*
!/.idea/inspectionProfiles/Project_Default.xml
target
/site

# custom config
cromwell-executions
cromwell-test-executions
cromwell-test-workflow-logs
cromwell-workflow-logs
local-cromwell-executions
log
native
scripts/docker-compose-mysql/compose/mysql/data
/logs/
/common-workflow-language/
# Vault rendered resources
artifactory_credentials.properties
aws_credentials
bcs_application.conf
bcs_login.inc.sh
centaur_secure.inc.conf
cromwell-centaur-requester-pays-service-account.json
cromwell-centaur-service-account.json
cromwell-service-account.json
cwl_conformance_test.inputs.json
dockerhub_auth.inc.sh
dockerhub_provider_config_v1.inc.conf
dockerhub_provider_config_v2.inc.conf
github_private_deploy_key
papi_application.inc.conf
papi_refresh_token.options.json
papi_v2_gcsa.options.json
private_docker_papi_v2_usa.options
tesk_application_ftp.conf
ftp_centaur_cwl_runner.conf
tesk_application.conf
**/__pycache__/
**/venv/
exome_germline_single_sample_v1.3/
**/*.pyc