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barcoding #20

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joergFLI opened this issue Jun 7, 2021 · 0 comments
Open

barcoding #20

joergFLI opened this issue Jun 7, 2021 · 0 comments

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@joergFLI
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joergFLI commented Jun 7, 2021

Dear nanoporetech team,
thank you very much for an inspiring tool which seems to work fine. Not sure if this is an issue or rather feature request: What is the best way to handle barcoded data with katuali? For technical reasons, we currently do base calling after sequencing not during. I might add guppy params to the config to do de-barcoding (eg. --barcode_kits EXP-NBD104) but how do I tell katuali to run assembly and polishing for each barcode separately?

Thanks

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