A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher.
Image data by Arthur Michaut @ Jérôme Gros Lab @ Institut Pasteur.
- Directly stitch napari layers: Use napari to load, visualize and preposition the tiles to be stitched.
- When working with multi-channel data, stick to the following naming convention:
{tile} :: {channel}. - Load either all or just a subset of the layers into the plugin.
- Choose registration options: registration channel, binning and more.
- Stitching = registration (refining the positions, optional) + fusion (joining the tiles into a single image).
- The registration result is shown in the viewer and the fused channels are added as new layers.
demo_3d.mp4
This demo uses the awesome napari-threedee for prepositioning the tiles. Image data: BigStitcher.
Head over to the user guide for more details.
You can install napari-stitcher via pip:
pip install napari-stitcherFor more installation options, see the installation docs.
Contributions are very welcome. Tests can be run with tox.
Distributed under the terms of the [BSD-3] license, "napari-stitcher" is free and open source software
If you encounter any problems, please file an issue along with a detailed description.