RlibInstall.txt

r=3.5.1
conda create --name myEnv python=3.7.1 rpy2=2.9.1 r=3.5.1 numpy scikit-learn matplotlib simplegeneric tqdm pandas scipy seaborn missingno adjusttext biopython jupyter jupyter_contrib_nbextensions
conda activate myEnv
conda install numpy=1.16.3


install.packages("BiocManager", repos='https://cran.ma.imperial.ac.uk/')



install_name_tool -change \
    /usr/lib/libc++abi.dylib \
    /Library/Frameworks/R.framework/Resources/lib/libc++abi.1.dylib \
    /Library/Frameworks/R.framework/Resources/lib/libc++.1.dylib

BiocManager::install("sva") # install limma
BiocManager::install("DESeq2")
BiocManager::install("edgeR")




install.packages("tidyverse")
install.packages("gridExtra")
install.packages("scales")
install.packages("locfit")


install.packages("sva")


update.packages(ask=FALSE,checkBuilt=TRUE,repos="https://cloud.r-project.org")

install.packages(c("tidyverse", "caret"), dependencies=TRUE,repos="https://cloud.r-project.org")




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