check-standard.yaml

# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
  push:
    branches-ignore: gh-pages
  pull_request:
    branches-ignore: gh-pages
  schedule:
    - cron: "0 0 * * 2"

name: R-check

jobs:
  R-CMD-check:
    runs-on: ${{ matrix.config.os }}

    name: ${{ matrix.config.os }} (${{ matrix.config.r }})

    strategy:
      fail-fast: false
      matrix:
        config:
          - {os: windows-latest, r: 'release'}
          - {os: macOS-latest, r: 'release'}
          - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'}
          - {os: ubuntu-latest, r: 'release'}
          - {os: ubuntu-latest, r: 'oldrel-1'}

    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
      R_KEEP_PKG_SOURCE: yes

    steps:
      - uses: actions/checkout@v3
        with:
          submodules: recursive

      - uses: r-lib/actions/setup-pandoc@v2

      - uses: r-lib/actions/setup-r@v2
        with:
          r-version: ${{ matrix.config.r }}
          http-user-agent: ${{ matrix.config.http-user-agent }}
          use-public-rspm: true

      - uses: r-lib/actions/setup-r-dependencies@v2
        with:
          extra-packages: any::rcmdcheck
          needs: check

      - name: Install system dependencies (macOS)
        if: runner.os == 'macOS'
        run: |
          brew update
          brew install coreutils automake

      - name: Set up local key-based SSH
        if: runner.os != 'Windows' # GHA does not allow empty passphrase on Windows
        run: |
          ssh-keygen -t rsa -f ~/.ssh/id_rsa -N "" -q
          cat ~/.ssh/id_rsa.pub >> ~/.ssh/authorized_keys
          ssh-keyscan -t rsa 127.0.0.1 >> ~/.ssh/known_hosts
          echo "Host 127.0.0.1" >> ~/.ssh/config
          echo "  IdentityFile ~/.ssh/id_rsa" >> ~/.ssh/config
          echo "$(hostname) 127.0.0.1" >> ~/.hosts
          chmod og-rw ~

      - name: Install R package and add paths
        if: runner.os != 'Windows'
        run: |
          R CMD INSTALL .
          echo '.libPaths("~/work/_temp/Library")' >> ~/.Rprofile # cmq package in R
          echo "$(pwd)/tests/bin" >> $GITHUB_PATH # local cmq
          sed -i "1iexport PATH=$(pwd)/tests/bin:\$PATH" ~/.bashrc || true # ssh cmq

      - name: Query capabilities
        if: runner.os != 'Windows' # does not recognize -e
        run: |
          set -x
          which R
          which sbatch || echo "sbatch not found"
          ssh 127.0.0.1 'which R; which sbatch; echo $PATH' || true
          ssh 127.0.0.1 'R --slave --no-restore -e ".libPaths()"' || true
          R --slave --no-restore -e "message(clustermq:::qsys_default)" || true
          ssh 127.0.0.1 'R --slave --no-restore -e "message(clustermq:::qsys_default)"' || true

      - name: make test
        if: runner.os != 'Windows'
        run: |
          timeout 300 make test

      - uses: r-lib/actions/check-r-package@v2
        with:
          error-on: '"error"'
          upload-snapshots: true

      - name: Print logs if failure
        if: failure() && runner.os != 'Windows'
        run: |
          set -x
          cat ~/*.log || true
          cat ~/worker.log || true
          cat ~/ssh_proxy.log || true
          cat clustermq.Rcheck/tests/* || true

      - name: Upload check results
        if: failure()
        uses: actions/upload-artifact@main
        with:
          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
          path: check